| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G47990 | CYP705A5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47990 | CYP705A5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G47990 | CYP705A5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.399052' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT5G47990 | CYP705A5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
|||||
| AT5G47990 | CYP705A5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47990 | CYP705A5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47980 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G47980 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.102941' Avg. expression score for this sample: '.328092' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT5G47980 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.1 | 0 | 0 | 0 | 8 | 100.00% | 0 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.102941' Avg. expression score for this sample: '3.48176' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT5G47980 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT5G47980 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47980 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47970 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.0 x 10-5 | 78 | 8 | 90.70% | 86 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47970 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 49 | 9 | 20 | 12 | 84.48% | 37.50% | 58 | 32 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.645576' Avg. expression score for this sample: '24.5474' Avg. expression score in LCM sample: '18.6517' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G47970 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.16842 x 10-1 | 45 | 5 | 19 | 15 | 90.00% | 44.12% | 50 | 34 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.645576' Avg. expression score for this sample: '22.1689' Avg. expression score in LCM sample: '18.6517' Tissue used: 'full endosperm' |
|||||
| AT5G47970 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 31 | 21 | 14 | 5 | 59.62% | 26.32% | 52 | 19 | TAIR8 |
Avg. embryo expression (dissected): '32.9216' Avg. embryo expression (LCM): '22.1408' |
||||
| AT5G47970 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.2563 x 10-1 | 8 | 2 | 80.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47970 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.2366 x 10-1 | 18 | 9 | 66.67% | 27 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47960 | RABA4C | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.3765 x 10-2 | 20 | 0 | 100.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G47960 | RABA4C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.85714 x 10-1 | 1 | 1 | 2 | 0 | 50.00% | 0.00% | 2 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '62.234' Avg. expression score in LCM sample: '87.3644' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G47960 | RABA4C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.23077 x 10-1 | 3 | 0 | 1 | 4 | 100.00% | 80.00% | 3 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '64.5482' Avg. expression score in LCM sample: '87.3644' Tissue used: 'full endosperm' |
||||
| AT5G47960 | RABA4C | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '21.5779' Avg. embryo expression (LCM): '0' |
|||||
| AT5G47960 | RABA4C | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47960 | RABA4C | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.5732 x 10-2 | 19 | 0 | 100.00% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G47950 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47950 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT5G47950 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT5G47950 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT5G47950 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G47950 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 3 | 0.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47940 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.7 x 10-5 | 260 | 40 | 86.67% | 300 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47940 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.66465 x 10-1 | 29 | 7 | 18 | 27 | 80.56% | 60.00% | 36 | 45 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.042431' Avg. expression score for this sample: '26.3721' Avg. expression score in LCM sample: '31.0714' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G47940 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.1305 x 10-2 | 68 | 32 | 30 | 125 | 68.00% | 80.65% | 100 | 155 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.042431' Avg. expression score for this sample: '51.7612' Avg. expression score in LCM sample: '31.0714' Tissue used: 'full endosperm' |
|||||
| AT5G47940 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.26173 x 10-1 | 24 | 33 | 9 | 10 | 42.11% | 52.63% | 57 | 19 | TAIR8 |
Avg. embryo expression (dissected): '34.0454' Avg. embryo expression (LCM): '31.2457' |
||||
| AT5G47940 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.72199 x 10-1 | 13 | 2 | 86.67% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47940 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.726 x 10-3 | 203 | 39 | 83.88% | 242 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47930 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.5 x 10-6 | 139 | 22 | 86.34% | 161 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47930 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.34585 x 10-1 | 85 | 20 | 24 | 19 | 80.95% | 44.19% | 105 | 43 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.930184' Avg. expression score for this sample: '80.9766' Avg. expression score in LCM sample: '53.0301' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G47930 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.93092 x 10-1 | 57 | 13 | 42 | 32 | 81.43% | 43.24% | 70 | 74 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.930184' Avg. expression score for this sample: '53.536' Avg. expression score in LCM sample: '53.0301' Tissue used: 'full endosperm' |
|||||
| AT5G47930 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.5 x 10-5 | 131 | 45 | 14 | 6 | 74.43% | 30.00% | 176 | 20 | TAIR8 |
Avg. embryo expression (dissected): '126.909' Avg. embryo expression (LCM): '282.681' |
||||
| AT5G47930 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.87 x 10-4 | 11 | 21 | 34.38% | 32 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47930 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.449 x 10-3 | 49 | 53 | 48.04% | 102 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47928 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G47928 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT5G47928 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 2 | 1 | 0 | 0 | 66.67% | 3 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.12856' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT5G47928 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
|||||
| AT5G47928 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G47928 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47920 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 91 | 4 | 95.79% | 95 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 2 | 100.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.284705' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT5G47920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 1 | 100.00% | 100.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.380391' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT5G47920 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT5G47920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G47920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 23 | 0 | 100.00% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47910 | RBOHD | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.5 x 10-5 | 186 | 55 | 77.18% | 241 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G47910 | RBOHD | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.76945 x 10-1 | 355 | 185 | 172 | 319 | 65.74% | 64.97% | 540 | 491 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.006114' Avg. expression score for this sample: '314.468' Avg. expression score in LCM sample: '36.3626' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G47910 | RBOHD | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.697 x 10-3 | 846 | 491 | 584 | 993 | 63.28% | 62.97% | 1337 | 1577 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.006114' Avg. expression score for this sample: '422.656' Avg. expression score in LCM sample: '36.3626' Tissue used: 'full endosperm' |
||||
| AT5G47910 | RBOHD | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.31917 x 10-1 | 440 | 450 | 95 | 111 | 49.44% | 53.88% | 890 | 206 | TAIR8 |
Avg. embryo expression (dissected): '399.391' Avg. embryo expression (LCM): '63.3203' |
|||
| AT5G47910 | RBOHD | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.64106 x 10-1 | 203 | 100 | 67.00% | 303 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G47910 | RBOHD | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.5 x 10-13 | 92 | 4 | 95.83% | 96 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G47900 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.0741 x 10-2 | 9 | 5 | 64.29% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47900 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 3 | 100.00% | 100.00% | 1 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.040741' Avg. expression score for this sample: '2.89424' Avg. expression score in LCM sample: '2.91019' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G47900 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.10526 x 10-1 | 4 | 0 | 0 | 6 | 100.00% | 100.00% | 4 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.040741' Avg. expression score for this sample: '2.838' Avg. expression score in LCM sample: '2.91019' Tissue used: 'full endosperm' |
|||||
| AT5G47900 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 3 | 4 | 0 | 1 | 42.86% | 100.00% | 7 | 1 | TAIR8 |
Avg. embryo expression (dissected): '8.93213' Avg. embryo expression (LCM): '6.63093' |
||||
| AT5G47900 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G47900 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.85057 x 10-1 | 14 | 2 | 87.50% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47890 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.0 x 10-20 | 255 | 10 | 96.23% | 265 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47890 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.27941 x 10-1 | 50 | 17 | 30 | 25 | 74.63% | 45.45% | 67 | 55 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.317168' Avg. expression score for this sample: '193.056' Avg. expression score in LCM sample: '162.177' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G47890 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.968 x 10-2 | 193 | 9 | 80 | 48 | 95.54% | 37.50% | 202 | 128 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.317168' Avg. expression score for this sample: '308.744' Avg. expression score in LCM sample: '162.177' Tissue used: 'full endosperm' |
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| AT5G47890 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 37 | 29 | 11 | 4 | 56.06% | 26.67% | 66 | 15 | TAIR8 |
Avg. embryo expression (dissected): '218.153' Avg. embryo expression (LCM): '309.632' |
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| AT5G47890 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.9 x 10-5 | 13 | 23 | 36.11% | 36 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47890 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.0 x 10-13 | 40 | 82 | 32.79% | 122 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47880 | ERF1-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 4483 | 1010 | 81.61% | 5493 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G47880 | ERF1-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.78441 x 10-1 | 1359 | 645 | 707 | 1232 | 67.81% | 63.54% | 2004 | 1939 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '9.7e-06' Avg. expression score for this sample: '1076.75' Avg. expression score in LCM sample: '782.385' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G47880 | ERF1-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.0 x 10-10 | 2361 | 841 | 1056 | 2453 | 73.74% | 69.91% | 3202 | 3509 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '9.7e-06' Avg. expression score for this sample: '1306.1' Avg. expression score in LCM sample: '782.385' Tissue used: 'full endosperm' |
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| AT5G47880 | ERF1-1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.065 x 10-3 | 1017 | 765 | 199 | 162 | 57.07% | 44.88% | 1782 | 361 | TAIR8 |
Avg. embryo expression (dissected): '820.859' Avg. embryo expression (LCM): '746.118' |
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| AT5G47880 | ERF1-1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.5639 x 10-2 | 315 | 109 | 74.29% | 424 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G47880 | ERF1-1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.3 x 10-6 | 3452 | 1260 | 73.26% | 4712 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G47870 | RAD52-2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.7 x 10-20 | 303 | 22 | 93.23% | 325 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G47870 | RAD52-2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.16723 x 10-1 | 63 | 12 | 19 | 22 | 84.00% | 53.66% | 75 | 41 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.329046' Avg. expression score for this sample: '303.497' Avg. expression score in LCM sample: '109.588' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G47870 | RAD52-2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.57841 x 10-1 | 229 | 72 | 138 | 225 | 76.08% | 61.98% | 301 | 363 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.329046' Avg. expression score for this sample: '605.609' Avg. expression score in LCM sample: '109.588' Tissue used: 'full endosperm' |
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| AT5G47870 | RAD52-2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.82088 x 10-1 | 63 | 45 | 21 | 17 | 58.33% | 44.74% | 108 | 38 | TAIR8 |
Avg. embryo expression (dissected): '707.503' Avg. embryo expression (LCM): '399.79' |
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| AT5G47870 | RAD52-2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.055 x 10-3 | 37 | 34 | 52.11% | 71 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G47870 | RAD52-2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.6 x 10-11 | 130 | 8 | 94.20% | 138 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G47860 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.945 x 10-3 | 31 | 0 | 100.00% | 31 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47860 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.76471 x 10-1 | 3 | 1 | 0 | 5 | 75.00% | 100.00% | 4 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.087634' Avg. expression score for this sample: '46.2101' Avg. expression score in LCM sample: '21.0621' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G47860 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.02758 x 10-1 | 19 | 13 | 4 | 39 | 59.38% | 90.70% | 32 | 43 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.087634' Avg. expression score for this sample: '49.2351' Avg. expression score in LCM sample: '21.0621' Tissue used: 'full endosperm' |
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| AT5G47860 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 5 | 0 | 0 | 50.00% | 10 | 0 | TAIR8 |
Avg. embryo expression (dissected): '51.2707' Avg. embryo expression (LCM): '45.8137' |
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| AT5G47860 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.9997 x 10-1 | 10 | 0 | 100.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47860 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 20 | 5 | 80.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47850 | CCR4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G47850 | CCR4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.323076' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G47850 | CCR4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 5 | 2 | 0 | 0 | 71.43% | 7 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.21581' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G47850 | CCR4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 3 | 0 | 0 | 50.00% | 6 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.58512' Avg. embryo expression (LCM): '.52746' |
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| AT5G47850 | CCR4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G47850 | CCR4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.96809 x 10-1 | 5 | 7 | 41.67% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G47840 | AMK2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.69 x 10-3 | 120 | 31 | 79.47% | 151 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G47840 | AMK2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.07146 x 10-1 | 37 | 23 | 26 | 47 | 61.67% | 64.38% | 60 | 73 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.891627' Avg. expression score for this sample: '90.0548' Avg. expression score in LCM sample: '33.8052' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G47840 | AMK2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 109 | 52 | 63 | 125 | 67.70% | 66.49% | 161 | 188 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.891627' Avg. expression score for this sample: '129.385' Avg. expression score in LCM sample: '33.8052' Tissue used: 'full endosperm' |
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| AT5G47840 | AMK2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.62631 x 10-1 | 99 | 83 | 17 | 32 | 54.40% | 65.31% | 182 | 49 | TAIR8 |
Avg. embryo expression (dissected): '182.289' Avg. embryo expression (LCM): '132.644' |