| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G72590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72590 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 2 | 100.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.99209' Avg. expression score in LCM sample: '29.6751' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.612 x 10-2 | 4 | 12 | 25.00% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72590 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '1.20562' |
||||||
| AT1G72580 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.980816' Avg. embryo expression (LCM): '0' |
||||||
| AT1G72580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '7.00857' Avg. expression score in LCM sample: '14.9037' Tissue used: 'full endosperm' |
|||||||
| AT1G72580 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '7.86548' Avg. expression score in LCM sample: '14.9037' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72570 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72570 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.234319' Avg. embryo expression (LCM): '0' |
||||||
| AT1G72570 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.417207' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT1G72570 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72570 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2.9552' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT1G72570 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72560 | PSD | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 4 | 66.67% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G72560 | PSD | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 19 | 11 | 11 | 29 | 63.33% | 72.50% | 30 | 40 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '74.3608' Avg. expression score in LCM sample: '52.8096' Tissue used: 'full endosperm' |
||||
| AT1G72560 | PSD | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0881 x 10-2 | 47 | 8 | 85.45% | 55 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G72560 | PSD | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.67218 x 10-1 | 35 | 14 | 71.43% | 49 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G72560 | PSD | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.72548 x 10-1 | 5 | 3 | 5 | 3 | 62.50% | 37.50% | 8 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '40.7234' Avg. expression score in LCM sample: '52.8096' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G72560 | PSD | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 4 | 3 | 2 | 2 | 57.14% | 50.00% | 7 | 4 | TAIR8 |
Avg. embryo expression (dissected): '42.1234' Avg. embryo expression (LCM): '51.6158' |
|||
| AT1G72550 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.48403 x 10-1 | 60 | 64 | 8 | 22 | 48.39% | 73.33% | 124 | 30 | TAIR8 |
Avg. embryo expression (dissected): '309.789' Avg. embryo expression (LCM): '333.393' |
||||
| AT1G72550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.2896 x 10-1 | 65 | 30 | 23 | 64 | 68.42% | 73.56% | 95 | 87 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.010892' Avg. expression score for this sample: '206.896' Avg. expression score in LCM sample: '173.715' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G72550 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.567 x 10-3 | 250 | 52 | 82.78% | 302 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.962 x 10-3 | 88 | 29 | 57 | 179 | 75.21% | 75.85% | 117 | 236 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.010892' Avg. expression score for this sample: '206.558' Avg. expression score in LCM sample: '173.715' Tissue used: 'full endosperm' |
|||||
| AT1G72550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.84831 x 10-1 | 37 | 8 | 82.22% | 45 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.21244 x 10-1 | 254 | 78 | 76.51% | 332 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.44043 x 10-1 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.82043 x 10-1 | 5 | 1 | 0 | 4 | 83.33% | 100.00% | 6 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.713982' Avg. expression score for this sample: '15.3753' Avg. expression score in LCM sample: '5.45293' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G72540 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.49917 x 10-1 | 2 | 7 | 0 | 1 | 22.22% | 100.00% | 9 | 1 | TAIR8 |
Avg. embryo expression (dissected): '36.691' Avg. embryo expression (LCM): '20.4956' |
||||
| AT1G72540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 6 | 2 | 1 | 0 | 75.00% | 0.00% | 8 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.713982' Avg. expression score for this sample: '11.122' Avg. expression score in LCM sample: '5.45293' Tissue used: 'full endosperm' |
|||||
| AT1G72540 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 1 | 80.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72530 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72530 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '8.72858' Avg. expression score in LCM sample: '2.61623' Tissue used: 'full endosperm' |
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| AT1G72530 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72530 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72530 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '13.2488' Avg. embryo expression (LCM): '13.3874' |
||||||
| AT1G72530 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '22.5783' Avg. expression score in LCM sample: '2.61623' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72520 | LOX4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.68 x 10-4 | 53 | 8 | 5 | 36 | 86.89% | 87.80% | 61 | 41 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '7.5e-36' Avg. expression score for this sample: '44.1292' Avg. expression score in LCM sample: '.970062' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72520 | LOX4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 8 | 10 | 0 | 1 | 44.44% | 100.00% | 18 | 1 | TAIR8 |
Avg. embryo expression (dissected): '14.5378' Avg. embryo expression (LCM): '0' |
|||
| AT1G72520 | LOX4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 91 | 7 | 92.86% | 98 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G72520 | LOX4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 116 | 27 | 21 | 495 | 81.12% | 95.93% | 143 | 516 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '7.5e-36' Avg. expression score for this sample: '197.214' Avg. expression score in LCM sample: '.970062' Tissue used: 'full endosperm' |
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| AT1G72520 | LOX4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.0 x 10-7 | 460 | 8 | 98.29% | 468 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G72520 | LOX4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.1 x 10-9 | 593 | 8 | 98.67% | 601 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G72510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.64686 x 10-1 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72510 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '29.0482' Avg. embryo expression (LCM): '20.9477' |
|||||
| AT1G72510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 1 | 1 | 2 | 50.00% | 66.67% | 2 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.096048' Avg. expression score for this sample: '145.748' Avg. expression score in LCM sample: '41.5657' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72510 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.01459 x 10-1 | 13 | 0 | 100.00% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.01075 x 10-1 | 8 | 2 | 1 | 17 | 80.00% | 94.44% | 10 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.096048' Avg. expression score for this sample: '121.036' Avg. expression score in LCM sample: '41.5657' Tissue used: 'full endosperm' |
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| AT1G72510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '14.1733' Avg. expression score in LCM sample: '7.7899' Tissue used: 'full endosperm' |
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| AT1G72500 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '37.2319' Avg. expression score in LCM sample: '7.7899' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72500 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '45.0105' Avg. embryo expression (LCM): '23.2836' |
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| AT1G72490 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT1G72490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT1G72490 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.215782' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT1G72490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.5 x 10-9 | 94 | 6 | 94.00% | 100 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.54433 x 10-1 | 294 | 85 | 143 | 169 | 77.57% | 54.17% | 379 | 312 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.034991' Avg. expression score for this sample: '265.146' Avg. expression score in LCM sample: '204.022' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G72480 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.5328 x 10-2 | 266 | 131 | 108 | 41 | 67.00% | 27.52% | 397 | 149 | TAIR8 |
Avg. embryo expression (dissected): '329.894' Avg. embryo expression (LCM): '195.248' |
||||
| AT1G72480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.879 x 10-3 | 84 | 62 | 57.53% | 146 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.1079 x 10-2 | 595 | 160 | 214 | 336 | 78.81% | 61.09% | 755 | 550 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.034991' Avg. expression score for this sample: '421.974' Avg. expression score in LCM sample: '204.022' Tissue used: 'full endosperm' |
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| AT1G72480 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.0 x 10-30 | 346 | 18 | 95.05% | 364 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72470 | EXO70D1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.17135 x 10-1 | 306 | 15 | 95.33% | 321 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | |||||||
| AT1G72470 | EXO70D1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | MEG | 7.46 x 10-4 | 30 | 3 | 2 | 29 | 90.91% | 93.55% | 33 | 31 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000156' Avg. expression score for this sample: '11.0512' Avg. expression score in LCM sample: '3.33643' Tissue used: 'full endosperm' |
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| AT1G72470 | EXO70D1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.90421 x 10-1 | 12 | 0 | 100.00% | 12 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | |||||||
| AT1G72470 | EXO70D1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.0844 x 10-2 | 189 | 44 | 81.12% | 233 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | |||||||
| AT1G72470 | EXO70D1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.02478 x 10-1 | 13 | 12 | 2 | 4 | 52.00% | 66.67% | 25 | 6 | TAIR8 |
Avg. embryo expression (dissected): '14.8445' Avg. embryo expression (LCM): '15.3968' |
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| AT1G72470 | EXO70D1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | MEG | 1.65322 x 10-1 | 13 | 2 | 1 | 7 | 86.67% | 87.50% | 15 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000156' Avg. expression score for this sample: '5.73744' Avg. expression score in LCM sample: '3.33643' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.132651' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72460 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT1G72460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.0936' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G72460 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72450 | JAZ6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72450 | JAZ6 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.2841' Avg. embryo expression (LCM): '11.9809' |
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| AT1G72450 | JAZ6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.84095' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72450 | JAZ6 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G72450 | JAZ6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 2 | 100.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '9.1973' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G72450 | JAZ6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72440 | EDA25 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.7134 x 10-1 | 7 | 8 | 46.67% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G72440 | EDA25 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.42999 x 10-1 | 154 | 41 | 104 | 143 | 78.97% | 57.89% | 195 | 247 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.570299' Avg. expression score for this sample: '689.799' Avg. expression score in LCM sample: '242.28' Tissue used: 'full endosperm' |
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| AT1G72440 | EDA25 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.1 x 10-12 | 351 | 71 | 83.18% | 422 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G72440 | EDA25 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.7492 x 10-2 | 172 | 124 | 58.11% | 296 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G72440 | EDA25 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.77096 x 10-1 | 242 | 63 | 137 | 112 | 79.34% | 44.98% | 305 | 249 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.570299' Avg. expression score for this sample: '1825.94' Avg. expression score in LCM sample: '242.28' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72440 | EDA25 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.6 x 10-5 | 344 | 172 | 79 | 57 | 66.67% | 41.91% | 516 | 136 | TAIR8 |
Avg. embryo expression (dissected): '3637.02' Avg. embryo expression (LCM): '1841.61' |
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| AT1G72430 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '419.714' Avg. embryo expression (LCM): '307.409' |
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| AT1G72430 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1199.7' Avg. expression score in LCM sample: '1018.02' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72430 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72430 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1076.97' Avg. expression score in LCM sample: '1018.02' Tissue used: 'full endosperm' |
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| AT1G72430 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72430 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |