| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G72900 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.568211' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72900 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 1 | 100.00% | 100.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.38653' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G72900 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72900 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 69 | 0 | 100.00% | 69 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72900 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.85326' Avg. embryo expression (LCM): '0' |
||||||
| AT1G72900 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 10 | 0 | 100.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72890 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 26 | 9 | 74.29% | 35 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72890 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Avg. embryo expression (dissected): '.566111' Avg. embryo expression (LCM): '0' |
|||||
| AT1G72890 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G72890 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.389984' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72890 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72890 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72880 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72880 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72880 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '53.4879' Avg. embryo expression (LCM): '53.9391' |
||||||
| AT1G72880 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72880 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '37.2008' Avg. expression score in LCM sample: '32.0121' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72880 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '47.7991' Avg. expression score in LCM sample: '32.0121' Tissue used: 'full endosperm' |
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| AT1G72870 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 2 | 100.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.13158' Avg. expression score in LCM sample: '10.7001' Tissue used: 'full endosperm' |
||||||
| AT1G72870 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.59257' Avg. expression score in LCM sample: '10.7001' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT1G72870 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72870 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72870 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72870 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.39292' Avg. embryo expression (LCM): '0' |
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| AT1G72860 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '24.3591' Avg. embryo expression (LCM): '15.1456' |
||||||
| AT1G72860 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72860 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '22.642' Avg. expression score in LCM sample: '17.7257' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT1G72860 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '31.5093' Avg. expression score in LCM sample: '17.7257' Tissue used: 'full endosperm' |
|||||||
| AT1G72860 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72860 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72855 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72855 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72855 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72855 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '14.0618' Avg. embryo expression (LCM): '15.2084' |
||||||
| AT1G72855 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '19.7471' Avg. expression score in LCM sample: '11.5967' Tissue used: 'full endosperm' |
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| AT1G72855 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '15.2291' Avg. expression score in LCM sample: '11.5967' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72850 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 11 | 2 | 9 | 8 | 84.62% | 47.06% | 13 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.225148' Avg. expression score for this sample: '22.8602' Avg. expression score in LCM sample: '32.4824' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72850 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.33991 x 10-1 | 38 | 7 | 8 | 20 | 84.44% | 71.43% | 45 | 28 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.225148' Avg. expression score for this sample: '31.9957' Avg. expression score in LCM sample: '32.4824' Tissue used: 'full endosperm' |
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| AT1G72850 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 12 | 4 | 75.00% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72850 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.3125 x 10-2 | 67 | 11 | 85.90% | 78 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72850 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.1768 x 10-1 | 17 | 7 | 4 | 6 | 70.83% | 60.00% | 24 | 10 | TAIR8 |
Avg. embryo expression (dissected): '39.6126' Avg. embryo expression (LCM): '20.8096' |
||||
| AT1G72850 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.22 x 10-4 | 24 | 32 | 42.86% | 56 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72840 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.7879 x 10-2 | 1 | 3 | 25.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72840 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '21.26' Avg. embryo expression (LCM): '8.13796' |
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| AT1G72840 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 3 | 1 | 0 | 3 | 75.00% | 100.00% | 4 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '11.6073' Avg. expression score in LCM sample: '6.59936' Tissue used: 'full endosperm' |
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| AT1G72840 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.15399' Avg. expression score in LCM sample: '6.59936' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72840 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 19 | 2 | 90.48% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72840 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72830 | NF-YA3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72830 | NF-YA3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72830 | NF-YA3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '331.342' Avg. embryo expression (LCM): '195.977' |
|||||
| AT1G72830 | NF-YA3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72830 | NF-YA3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '98.4033' Avg. expression score in LCM sample: '10.509' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72830 | NF-YA3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '133.54' Avg. expression score in LCM sample: '10.509' Tissue used: 'full endosperm' |
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| AT1G72820 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.6048 x 10-2 | 32 | 6 | 19 | 69 | 84.21% | 78.41% | 38 | 88 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.013934' Avg. expression score for this sample: '471.696' Avg. expression score in LCM sample: '230.096' Tissue used: 'full endosperm' |
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| AT1G72820 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 7 | 1 | 1 | 1 | 87.50% | 50.00% | 8 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.013934' Avg. expression score for this sample: '685.962' Avg. expression score in LCM sample: '230.096' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72820 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.957 x 10-3 | 68 | 4 | 94.44% | 72 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72820 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72820 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.36732 x 10-1 | 33 | 4 | 89.19% | 37 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72820 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.89073 x 10-1 | 14 | 6 | 6 | 2 | 70.00% | 25.00% | 20 | 8 | TAIR8 |
Avg. embryo expression (dissected): '1670.49' Avg. embryo expression (LCM): '330.931' |
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| AT1G72810 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.73407 x 10-1 | 159 | 158 | 30 | 39 | 50.16% | 56.52% | 317 | 69 | TAIR8 |
Avg. embryo expression (dissected): '344.195' Avg. embryo expression (LCM): '204.027' |
||||
| AT1G72810 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.2476 x 10-2 | 97 | 7 | 93.27% | 104 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | ||||||||
| AT1G72810 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | MEG | 3.8607 x 10-2 | 55 | 13 | 11 | 38 | 80.88% | 77.55% | 68 | 49 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.6e-08' Avg. expression score for this sample: '79.6161' Avg. expression score in LCM sample: '42.183' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72810 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | MEG | 7.2 x 10-8 | 82 | 9 | 23 | 135 | 90.11% | 85.44% | 91 | 158 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.6e-08' Avg. expression score for this sample: '102.438' Avg. expression score in LCM sample: '42.183' Tissue used: 'full endosperm' |
|||||
| AT1G72810 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.70711 x 10-1 | 20 | 7 | 74.07% | 27 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | ||||||||
| AT1G72810 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.7 x 10-9 | 316 | 8 | 97.53% | 324 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | ||||||||
| AT1G72800 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72800 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72800 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72800 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.80886' Avg. embryo expression (LCM): '0' |
||||||
| AT1G72800 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '48.8933' Avg. expression score in LCM sample: '73.2544' Tissue used: 'full endosperm' |
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| AT1G72800 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '59.8737' Avg. expression score in LCM sample: '73.2544' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72790 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | MEG | 3.61428 x 10-1 | 14 | 9 | 9 | 38 | 60.87% | 80.85% | 23 | 47 | TAIR8 |
Validated by Sanger sequencing: '+' Overall p-value after pooling both replicates: '.00083' Avg. expression score for this sample: '251.437' Avg. expression score in LCM sample: '98.1233' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72790 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | MEG | 3.62 x 10-4 | 38 | 3 | 9 | 52 | 92.68% | 85.25% | 41 | 61 | TAIR8 |
Validated by Sanger sequencing: '+' Overall p-value after pooling both replicates: '.00083' Avg. expression score for this sample: '291.466' Avg. expression score in LCM sample: '98.1233' Tissue used: 'full endosperm' |
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| AT1G72790 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.15765 x 10-1 | 11 | 0 | 100.00% | 11 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | ||||||||
| AT1G72790 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.74 x 10-4 | 140 | 7 | 95.24% | 147 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | ||||||||
| AT1G72790 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 2 | 1 | 2 | 50.00% | 66.67% | 4 | 3 | TAIR8 |
Avg. embryo expression (dissected): '75.7668' Avg. embryo expression (LCM): '24.4767' |
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| AT1G72790 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.62 x 10-4 | 55 | 0 | 100.00% | 55 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | ||||||||
| AT1G72780 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72780 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT1G72780 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G72780 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72780 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72780 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G72770 | HAB1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.33 x 10-4 | 519 | 60 | 89.64% | 579 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G72770 | HAB1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.33213 x 10-1 | 12 | 5 | 1 | 1 | 70.59% | 50.00% | 17 | 2 | TAIR8 |
Avg. embryo expression (dissected): '170.835' Avg. embryo expression (LCM): '65.0409' |
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| AT1G72770 | HAB1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.3 x 10-5 | 575 | 233 | 71.16% | 808 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G72770 | HAB1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 25 | 5 | 83.33% | 30 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G72770 | HAB1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.7 x 10-8 | 145 | 45 | 28 | 205 | 76.32% | 87.98% | 190 | 233 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '5.7e-08' Avg. expression score for this sample: '374.615' Avg. expression score in LCM sample: '79.0454' Tissue used: 'full endosperm' |
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| AT1G72770 | HAB1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.93294 x 10-1 | 17 | 4 | 9 | 23 | 80.95% | 71.88% | 21 | 32 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '5.7e-08' Avg. expression score for this sample: '224.68' Avg. expression score in LCM sample: '79.0454' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72760 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.39775 x 10-1 | 14 | 4 | 12 | 9 | 77.78% | 42.86% | 18 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.357197' Avg. expression score for this sample: '14.4002' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G72760 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 1 | 80.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72760 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.44474 x 10-1 | 82 | 30 | 4 | 19 | 73.21% | 82.61% | 112 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.357197' Avg. expression score for this sample: '35.4738' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G72760 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.03862 x 10-1 | 46 | 12 | 79.31% | 58 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72760 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.18271 x 10-1 | 15 | 12 | 55.56% | 27 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G72760 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.9602 x 10-2 | 22 | 6 | 1 | 1 | 78.57% | 50.00% | 28 | 2 | TAIR8 |
Avg. embryo expression (dissected): '15.5278' Avg. embryo expression (LCM): '0' |
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| AT1G72750 | TIM23-2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.88853 x 10-1 | 24 | 20 | 2 | 4 | 54.55% | 66.67% | 44 | 6 | TAIR8 |
Avg. embryo expression (dissected): '703.54' Avg. embryo expression (LCM): '644.72' |
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| AT1G72750 | TIM23-2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.45057 x 10-1 | 50 | 9 | 84.75% | 59 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G72750 | TIM23-2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.786 x 10-3 | 168 | 60 | 48 | 161 | 73.68% | 77.03% | 228 | 209 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001159' Avg. expression score for this sample: '589.561' Avg. expression score in LCM sample: '166.131' Tissue used: 'full endosperm' |
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| AT1G72750 | TIM23-2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.7765 x 10-2 | 42 | 6 | 9 | 20 | 87.50% | 68.97% | 48 | 29 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001159' Avg. expression score for this sample: '612.018' Avg. expression score in LCM sample: '166.131' Tissue used: 'pure endosperm, no chalazal' |