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Gene ID Gene Name Tissue Study Parent A Parent B Stage Replicate Replicate Imprinting Status Overall Imprinting Status Imprinting p-value Imprinting Score A x B, A counts A x B, B counts B x A, A counts B x A, B counts % Maternal AxB % Maternal BxA Tot Counts AxB Tot Counts BxA Strain Score Strain p-value Genome Assembly Notes
AT5G48450 sks3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 8.616 x 10-3 62 42 60 57 59.62% 48.72% 104 117 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.016595'
Avg. expression score for this sample: '58.3745'
Avg. expression score in LCM sample: '21.65'
Tissue used: 'pure endosperm, no chalazal'
AT5G48450 sks3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 4.55785 x 10-1 111 52 65 92 68.10% 58.60% 163 157 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.016595'
Avg. expression score for this sample: '48.4933'
Avg. expression score in LCM sample: '21.65'
Tissue used: 'full endosperm'
AT5G48450 sks3 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 3.76965 x 10-1 64 92 22 30 41.03% 57.69% 156 52 TAIR8 Avg. embryo expression (dissected): '84.4003'
Avg. embryo expression (LCM): '49.5813'
AT5G48450 sks3 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.3012 x 10-2 29 7 80.56% 36 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48450 sks3 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.67117 x 10-1 23 24 48.94% 47 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48450 sks3 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.2 x 10-7 59 6 90.77% 65 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48440 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 8.21033 x 10-1 16 3 10 17 84.21% 62.96% 19 27 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.228979'
Avg. expression score for this sample: '52.7475'
Avg. expression score in LCM sample: '16.4617'
Tissue used: 'pure endosperm, no chalazal'
AT5G48440 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 2.15302 x 10-1 56 23 18 55 70.89% 75.34% 79 73 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.228979'
Avg. expression score for this sample: '77.7918'
Avg. expression score in LCM sample: '16.4617'
Tissue used: 'full endosperm'
AT5G48440 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 21 21 11 9 50.00% 45.00% 42 20 TAIR8 Avg. embryo expression (dissected): '75.7327'
Avg. embryo expression (LCM): '67.3893'
AT5G48440 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.90931 x 10-1 11 1 91.67% 12 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48440 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.91581 x 10-1 38 8 82.61% 46 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48440 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 7.9 x 10-5 58 3 95.08% 61 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48430 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G48430 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 1.0 1 0 0 0 100.00% 1 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '2.33111'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G48430 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '.800335'
Avg. embryo expression (LCM): '0'
AT5G48430 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48430 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48430 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48420 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G48420 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G48420 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G48420 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48420 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48420 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48410 GLR1.3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 0 0 2 0 0.00% 0 2 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.64472'
Avg. expression score for this sample: '.558831'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G48410 GLR1.3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 9.0226 x 10-2 10 0 0 1 100.00% 100.00% 10 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.64472'
Avg. expression score for this sample: '1.35924'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G48410 GLR1.3 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 2 0 0 0 100.00% 2 0 TAIR8 Avg. embryo expression (dissected): '.791367'
Avg. embryo expression (LCM): '0'
AT5G48410 GLR1.3 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48410 GLR1.3 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 3.71429 x 10-1 1 1 50.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48410 GLR1.3 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.12787 x 10-1 29 1 96.67% 30 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48400 ATGLR1.2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 1.0 0 0 0 1 100.00% 0 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '.689532'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G48400 ATGLR1.2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '2.46935'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G48400 ATGLR1.2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 1 0 0 0.00% 1 0 TAIR8 Avg. embryo expression (dissected): '4.0349'
Avg. embryo expression (LCM): '1.11771'
AT5G48400 ATGLR1.2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48400 ATGLR1.2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48400 ATGLR1.2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48390 AtSPO22 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 1 0 2 2 100.00% 50.00% 1 4 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.384085'
Avg. expression score for this sample: '3.7816'
Avg. expression score in LCM sample: '9.42136'
Tissue used: 'pure endosperm, no chalazal'
AT5G48390 AtSPO22 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 4.87607 x 10-1 12 4 0 6 75.00% 100.00% 16 6 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.384085'
Avg. expression score for this sample: '8.71613'
Avg. expression score in LCM sample: '9.42136'
Tissue used: 'full endosperm'
AT5G48390 AtSPO22 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 7.22393 x 10-1 2 10 0 4 16.67% 100.00% 12 4 TAIR8 Avg. embryo expression (dissected): '15.9629'
Avg. embryo expression (LCM): '7.6105'
AT5G48390 AtSPO22 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48390 AtSPO22 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 6 1 85.71% 7 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48390 AtSPO22 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 4.0256 x 10-1 11 1 91.67% 12 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48385 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.71662 x 10-1 243 148 124 385 62.15% 75.64% 391 509 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.001786'
Avg. expression score for this sample: '4413.33'
Avg. expression score in LCM sample: '609.949'
Tissue used: 'pure endosperm, no chalazal'
AT5G48385 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 3.391 x 10-3 373 153 158 443 70.91% 73.71% 526 601 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.001786'
Avg. expression score for this sample: '2629.56'
Avg. expression score in LCM sample: '609.949'
Tissue used: 'full endosperm'
AT5G48385 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 7.012 x 10-3 169 284 70 89 37.31% 55.97% 453 159 TAIR8 Avg. embryo expression (dissected): '3800.09'
Avg. embryo expression (LCM): '1047.4'
AT5G48385 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0407 x 10-2 129 31 80.62% 160 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48385 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 3.7 x 10-15 336 40 89.36% 376 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48385 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 638 35 94.80% 673 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48380 BIR1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 7.1243 x 10-2 92 30 39 105 75.41% 72.92% 122 144 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '6.9e-13'
Avg. expression score for this sample: '43.2748'
Avg. expression score in LCM sample: '13.3457'
Tissue used: 'pure endosperm, no chalazal'
AT5G48380 BIR1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 9.5 x 10-13 308 86 84 434 78.17% 83.78% 394 518 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '6.9e-13'
Avg. expression score for this sample: '113.601'
Avg. expression score in LCM sample: '13.3457'
Tissue used: 'full endosperm'
AT5G48380 BIR1 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 7.46404 x 10-1 121 132 26 27 47.83% 50.94% 253 53 TAIR8 Avg. embryo expression (dissected): '73.3822'
Avg. embryo expression (LCM): '34.6742'
AT5G48380 BIR1 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.50378 x 10-1 80 15 84.21% 95 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48380 BIR1 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 2.2 x 10-8 431 44 90.74% 475 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48380 BIR1 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 4.1 x 10-16 853 73 92.12% 926 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48375 TGG3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G48375 TGG3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.404422'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G48375 TGG3 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G48375 TGG3 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48375 TGG3 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48375 TGG3 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48370 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 16 2 7 1 88.89% 12.50% 18 8 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.5038'
Avg. expression score for this sample: '11.8161'
Avg. expression score in LCM sample: '20.2096'
Tissue used: 'pure endosperm, no chalazal'
AT5G48370 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 0.4073 29 4 10 13 87.88% 56.52% 33 23 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.5038'
Avg. expression score for this sample: '23.1931'
Avg. expression score in LCM sample: '20.2096'
Tissue used: 'full endosperm'
AT5G48370 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 15 9 8 1 62.50% 11.11% 24 9 TAIR8 Avg. embryo expression (dissected): '26.4473'
Avg. embryo expression (LCM): '30.4294'
AT5G48370 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.08035 x 10-1 8 0 100.00% 8 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48370 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 4.882 x 10-3 55 5 91.67% 60 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48370 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.13 x 10-4 138 13 91.39% 151 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48360 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 4.80733 x 10-1 26 15 13 15 63.41% 53.57% 41 28 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.037752'
Avg. expression score for this sample: '190.05'
Avg. expression score in LCM sample: '51.0018'
Tissue used: 'pure endosperm, no chalazal'
AT5G48360 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.3801 x 10-2 34 13 45 35 72.34% 43.75% 47 80 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.037752'
Avg. expression score for this sample: '119.964'
Avg. expression score in LCM sample: '51.0018'
Tissue used: 'full endosperm'
AT5G48360 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 5.05256 x 10-1 261 267 70 51 49.43% 42.15% 528 121 TAIR8 Avg. embryo expression (dissected): '2632.85'
Avg. embryo expression (LCM): '1650'
AT5G48360 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.26689 x 10-1 4 7 36.36% 11 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48360 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.43887 x 10-1 2 6 25.00% 8 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48360 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 4.72177 x 10-1 18 19 48.65% 37 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48350 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 7.87081 x 10-1 3 8 4 14 27.27% 77.78% 11 18 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.595538'
Avg. expression score for this sample: '14.7918'
Avg. expression score in LCM sample: '3.88025'
Tissue used: 'pure endosperm, no chalazal'
AT5G48350 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 2.34869 x 10-1 3 9 0 34 25.00% 100.00% 12 34 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.595538'
Avg. expression score for this sample: '18.4197'
Avg. expression score in LCM sample: '3.88025'
Tissue used: 'full endosperm'
AT5G48350 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 3.32973 x 10-1 17 28 5 4 37.78% 44.44% 45 9 TAIR8 Avg. embryo expression (dissected): '29.8489'
Avg. embryo expression (LCM): '20.9854'
AT5G48350 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.03722 x 10-1 9 0 100.00% 9 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48350 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 7.0093 x 10-2 27 3 90.00% 30 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48350 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.6605 x 10-2 0 3 0.00% 3 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48340 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 115 11 58 21 91.27% 26.58% 126 79 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.611725'
Avg. expression score for this sample: '39.9565'
Avg. expression score in LCM sample: '32.1149'
Tissue used: 'pure endosperm, no chalazal'
AT5G48340 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.61406 x 10-1 367 33 181 95 91.75% 34.42% 400 276 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.611725'
Avg. expression score for this sample: '88.642'
Avg. expression score in LCM sample: '32.1149'
Tissue used: 'full endosperm'
AT5G48340 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 3.751 x 10-3 100 25 31 10 80.00% 24.39% 125 41 TAIR8 Avg. embryo expression (dissected): '46.6103'
Avg. embryo expression (LCM): '37.952'
AT5G48340 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.643 x 10-3 10 16 38.46% 26 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48340 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 86 362 19.20% 448 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48340 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 481 11 97.76% 492 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48335 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.15757 x 10-1 553 88 217 160 86.27% 42.44% 641 377 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.013218'
Avg. expression score for this sample: '420.712'
Avg. expression score in LCM sample: '116.261'
Tissue used: 'pure endosperm, no chalazal'
AT5G48335 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.3996 x 10-2 267 30 118 120 89.90% 50.42% 297 238 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.013218'
Avg. expression score for this sample: '166.787'
Avg. expression score in LCM sample: '116.261'
Tissue used: 'full endosperm'
AT5G48335 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.9 x 10-20 739 199 148 40 78.78% 21.28% 938 188 TAIR8 Avg. embryo expression (dissected): '665.824'
Avg. embryo expression (LCM): '476.108'
AT5G48335 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.865 x 10-3 28 26 51.85% 54 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48335 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 5.34793 x 10-1 62 21 74.70% 83 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48335 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 x 10-29 302 9 97.11% 311 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48330 RUG2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 7.12313 x 10-1 119 41 51 50 74.38% 49.50% 160 101 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.944639'
Avg. expression score for this sample: '74.1022'
Avg. expression score in LCM sample: '32.6882'
Tissue used: 'pure endosperm, no chalazal'
AT5G48330 RUG2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.26133 x 10-1 91 22 40 54 80.53% 57.45% 113 94 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.944639'
Avg. expression score for this sample: '48.5498'
Avg. expression score in LCM sample: '32.6882'
Tissue used: 'full endosperm'
AT5G48330 RUG2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.016 x 10-3 148 50 42 20 74.75% 32.26% 198 62 TAIR8 Avg. embryo expression (dissected): '119.634'
Avg. embryo expression (LCM): '82.1331'
AT5G48330 RUG2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.50191 x 10-1 12 10 54.55% 22 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48330 RUG2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 2.12134 x 10-1 51 17 75.00% 68 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48330 RUG2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 5.5 x 10-15 157 8 95.15% 165 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G48320 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '.485031'
Tissue used: 'pure endosperm, no chalazal'
AT5G48320 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 1.0 1 0 0 0 100.00% 1 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '.173836'
Avg. expression score in LCM sample: '.485031'
Tissue used: 'full endosperm'
AT5G48320 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '1.1987'
Avg. embryo expression (LCM): '2.88847'
AT5G48320 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'