| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G73560 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.80172 x 10-1 | 0 | 0 | 6 | 6 | 50.00% | 0 | 12 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '4.73899' Avg. expression score in LCM sample: '11.1116' Tissue used: 'full endosperm' |
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| AT1G73560 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 1 | 0 | 4 | 0.00% | 100.00% | 1 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.93922' Avg. expression score in LCM sample: '11.1116' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G73560 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.47308 x 10-1 | 3443 | 1070 | 76.29% | 4513 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73560 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 0 | 4 | 0 | 100.00% | 0.00% | 2 | 4 | TAIR8 |
Avg. embryo expression (dissected): '11.4972' Avg. embryo expression (LCM): '4.74714' |
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| AT1G73550 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 0 | 0 | 50.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '43.15' Avg. embryo expression (LCM): '17.3685' |
|||||
| AT1G73550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '18.3238' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G73550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '8.22703' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT1G73550 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.16072 x 10-1 | 34 | 23 | 59.65% | 57 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 42 | 10 | 80.77% | 52 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G73540 | NUDT21 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.28531 x 10-1 | 52 | 9 | 85.25% | 61 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G73540 | NUDT21 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.3772 | 249 | 43 | 85.27% | 292 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G73540 | NUDT21 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.67853 x 10-1 | 261 | 49 | 84.19% | 310 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G73540 | NUDT21 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.93025 x 10-1 | 49 | 55 | 15 | 74 | 47.12% | 83.15% | 104 | 89 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.0e-18' Avg. expression score for this sample: '87.7637' Avg. expression score in LCM sample: '7.7899' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G73540 | NUDT21 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.9133 x 10-2 | 21 | 52 | 5 | 7 | 28.77% | 58.33% | 73 | 12 | TAIR8 |
Avg. embryo expression (dissected): '48.8527' Avg. embryo expression (LCM): '18.6244' |
|||
| AT1G73540 | NUDT21 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.0 x 10-25 | 147 | 55 | 66 | 656 | 72.77% | 90.86% | 202 | 722 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.0e-18' Avg. expression score for this sample: '267.792' Avg. expression score in LCM sample: '7.7899' Tissue used: 'full endosperm' |
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| AT1G73530 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.82043 x 10-1 | 9 | 0 | 1 | 0 | 100.00% | 0.00% | 9 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '92.292' Avg. expression score in LCM sample: '24.5602' Tissue used: 'full endosperm' |
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| AT1G73530 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.92075 x 10-1 | 3 | 0 | 4 | 0 | 100.00% | 0.00% | 3 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '62.1241' Avg. expression score in LCM sample: '24.5602' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G73530 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.72069 x 10-1 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73530 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.57057 x 10-1 | 13 | 1 | 3 | 0 | 92.86% | 0.00% | 14 | 3 | TAIR8 |
Avg. embryo expression (dissected): '205.929' Avg. embryo expression (LCM): '199.393' |
||||
| AT1G73530 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G73530 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G73510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G73510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73510 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.361546' Avg. embryo expression (LCM): '0' |
|||||
| AT1G73510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.40482 x 10-1 | 1 | 7 | 0 | 3 | 12.50% | 100.00% | 8 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.564807' Avg. expression score for this sample: '3.84204' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G73510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.9062 x 10-2 | 15 | 0 | 0 | 3 | 100.00% | 100.00% | 15 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.564807' Avg. expression score for this sample: '8.97823' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT1G73510 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 2 | 75.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73500 | MKK9 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G73500 | MKK9 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.008901' Avg. expression score for this sample: '14.0108' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT1G73500 | MKK9 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '39.2762' Avg. embryo expression (LCM): '6.98257' |
||||
| AT1G73500 | MKK9 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.901 x 10-3 | 6 | 0 | 0 | 16 | 100.00% | 100.00% | 6 | 16 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.008901' Avg. expression score for this sample: '67.4423' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||
| AT1G73500 | MKK9 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G73500 | MKK9 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.52941 x 10-1 | 11 | 1 | 91.67% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G73490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.24175 x 10-1 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.45655 x 10-1 | 52 | 20 | 72.22% | 72 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.99414 x 10-1 | 49 | 19 | 19 | 51 | 72.06% | 72.86% | 68 | 70 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.812686' Avg. expression score for this sample: '231.666' Avg. expression score in LCM sample: '32.9674' Tissue used: 'full endosperm' |
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| AT1G73490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.5159 x 10-1 | 8 | 9 | 4 | 4 | 47.06% | 50.00% | 17 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.812686' Avg. expression score for this sample: '108.702' Avg. expression score in LCM sample: '32.9674' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G73490 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.22 x 10-4 | 103 | 15 | 87.29% | 118 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73490 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 20 | 14 | 9 | 1 | 58.82% | 10.00% | 34 | 10 | TAIR8 |
Avg. embryo expression (dissected): '229.596' Avg. embryo expression (LCM): '260.565' |
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| AT1G73480 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '69.2955' Avg. embryo expression (LCM): '9.26823' |
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| AT1G73480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '11.5818' Avg. expression score in LCM sample: '6.51118' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G73480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 1 | 1 | 0 | 0.00% | 0.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '6.72172' Avg. expression score in LCM sample: '6.51118' Tissue used: 'full endosperm' |
|||||
| AT1G73480 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G73470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G73470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G73470 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G73470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '41.3569' Avg. expression score in LCM sample: '30.6158' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G73470 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '78.4373' Avg. embryo expression (LCM): '71.1695' |
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| AT1G73470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '45.5962' Avg. expression score in LCM sample: '30.6158' Tissue used: 'full endosperm' |
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| AT1G73460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.1267 x 10-2 | 71 | 18 | 40 | 116 | 79.78% | 74.36% | 89 | 156 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.153691' Avg. expression score for this sample: '143.764' Avg. expression score in LCM sample: '68.4041' Tissue used: 'full endosperm' |
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| AT1G73460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.28443 x 10-1 | 24 | 14 | 10 | 4 | 63.16% | 28.57% | 38 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.153691' Avg. expression score for this sample: '95.3581' Avg. expression score in LCM sample: '68.4041' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G73460 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.4 x 10-12 | 164 | 6 | 96.47% | 170 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73460 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.46895 x 10-1 | 23 | 11 | 5 | 8 | 67.65% | 61.54% | 34 | 13 | TAIR8 |
Avg. embryo expression (dissected): '165.137' Avg. embryo expression (LCM): '113.153' |
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| AT1G73460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.1644 x 10-2 | 55 | 10 | 84.62% | 65 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.34109 x 10-1 | 17 | 12 | 58.62% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73450 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73450 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.73953 x 10-1 | 13 | 3 | 81.25% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73450 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.41786 x 10-1 | 15 | 10 | 11 | 1 | 60.00% | 8.33% | 25 | 12 | TAIR8 |
Avg. embryo expression (dissected): '46.1567' Avg. embryo expression (LCM): '48.6896' |
||||
| AT1G73450 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 9 | 4 | 5 | 5 | 69.23% | 50.00% | 13 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '19.1927' Avg. expression score in LCM sample: '13.0664' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G73450 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.35369 x 10-1 | 10 | 3 | 13 | 27 | 76.92% | 67.50% | 13 | 40 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '40.5054' Avg. expression score in LCM sample: '13.0664' Tissue used: 'full endosperm' |
|||||
| AT1G73450 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.9269 x 10-2 | 22 | 3 | 88.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73440 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.3 x 10-5 | 94 | 12 | 88.68% | 106 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73440 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.12966 x 10-1 | 48 | 29 | 27 | 54 | 62.34% | 66.67% | 77 | 81 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.345138' Avg. expression score for this sample: '190.326' Avg. expression score in LCM sample: '87.0558' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G73440 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 57 | 56 | 8 | 7 | 50.44% | 46.67% | 113 | 15 | TAIR8 |
Avg. embryo expression (dissected): '191.028' Avg. embryo expression (LCM): '162.608' |
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| AT1G73440 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.62501 x 10-1 | 69 | 48 | 50 | 181 | 58.97% | 78.35% | 117 | 231 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.345138' Avg. expression score for this sample: '177.636' Avg. expression score in LCM sample: '87.0558' Tissue used: 'full endosperm' |
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| AT1G73440 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.03 x 10-4 | 217 | 51 | 80.97% | 268 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73440 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.62046 x 10-1 | 14 | 10 | 58.33% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73430 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.8257 x 10-2 | 16 | 1 | 94.12% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73430 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.43139 x 10-1 | 56 | 22 | 71.79% | 78 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73430 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.12508 x 10-1 | 22 | 7 | 13 | 26 | 75.86% | 66.67% | 29 | 39 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.88111' Avg. expression score for this sample: '151.902' Avg. expression score in LCM sample: '64.4504' Tissue used: 'full endosperm' |
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| AT1G73430 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 14 | 8 | 4 | 8 | 63.64% | 66.67% | 22 | 12 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.88111' Avg. expression score for this sample: '110.006' Avg. expression score in LCM sample: '64.4504' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G73430 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.3212 x 10-2 | 46 | 8 | 85.19% | 54 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73430 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.90529 x 10-1 | 9 | 3 | 3 | 2 | 75.00% | 40.00% | 12 | 5 | TAIR8 |
Avg. embryo expression (dissected): '138.982' Avg. embryo expression (LCM): '146.446' |
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| AT1G73410 | MYB54 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.236418' Avg. embryo expression (LCM): '0' |
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| AT1G73410 | MYB54 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.004029' Avg. expression score for this sample: '.84855' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G73410 | MYB54 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.898 x 10-3 | 2 | 0 | 0 | 22 | 100.00% | 100.00% | 2 | 22 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.004029' Avg. expression score for this sample: '7.51912' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G73410 | MYB54 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 10 | 0 | 100.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G73410 | MYB54 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.0 x 10-6 | 0 | 5 | 0.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G73410 | MYB54 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73400 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.78442 x 10-1 | 12 | 4 | 75.00% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73400 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.06803 x 10-1 | 140 | 52 | 72.92% | 192 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73400 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.389 x 10-3 | 105 | 21 | 83.33% | 126 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73400 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 16 | 9 | 4 | 12 | 64.00% | 75.00% | 25 | 16 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.80886' Avg. expression score for this sample: '48.6768' Avg. expression score in LCM sample: '48.2973' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G73400 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 11 | 16 | 4 | 8 | 40.74% | 66.67% | 27 | 12 | TAIR8 |
Avg. embryo expression (dissected): '71.6933' Avg. embryo expression (LCM): '60.997' |
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| AT1G73400 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.87815 x 10-1 | 32 | 11 | 25 | 47 | 74.42% | 65.28% | 43 | 72 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.80886' Avg. expression score for this sample: '65.8657' Avg. expression score in LCM sample: '48.2973' Tissue used: 'full endosperm' |
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| AT1G73390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | MEG | 2.32 x 10-4 | 30 | 4 | 10 | 69 | 88.24% | 87.34% | 34 | 79 | TAIR8 |
Validated by Sanger sequencing: '+' Overall p-value after pooling both replicates: '.000013' Avg. expression score for this sample: '28.4597' Avg. expression score in LCM sample: '9.37727' Tissue used: 'full endosperm' |
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| AT1G73390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | MEG | 2.9285 x 10-2 | 23 | 7 | 4 | 32 | 76.67% | 88.89% | 30 | 36 | TAIR8 |
Validated by Sanger sequencing: '+' Overall p-value after pooling both replicates: '.000013' Avg. expression score for this sample: '19.9619' Avg. expression score in LCM sample: '9.37727' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G73390 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.4 x 10-9 | 254 | 1 | 99.61% | 255 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | ||||||||
| AT1G73390 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.31499 x 10-1 | 22 | 25 | 11 | 9 | 46.81% | 45.00% | 47 | 20 | TAIR8 |
Avg. embryo expression (dissected): '31.4861' Avg. embryo expression (LCM): '36.8469' |
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| AT1G73390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.05 x 10-4 | 174 | 5 | 97.21% | 179 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | ||||||||
| AT1G73390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.22321 x 10-1 | 14 | 0 | 100.00% | 14 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | ||||||||
| AT1G73380 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.00721 x 10-1 | 5 | 2 | 71.43% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73380 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.75295 x 10-1 | 33 | 12 | 73.33% | 45 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G73380 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.23107 x 10-1 | 7 | 5 | 2 | 5 | 58.33% | 71.43% | 12 | 7 | TAIR8 |
Avg. embryo expression (dissected): '121.951' Avg. embryo expression (LCM): '45.0225' |
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| AT1G73380 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.30014 x 10-1 | 11 | 1 | 1 | 8 | 91.67% | 88.89% | 12 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.02014' Avg. expression score for this sample: '159.586' Avg. expression score in LCM sample: '42.1536' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G73380 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.3783 x 10-2 | 22 | 4 | 8 | 30 | 84.62% | 78.95% | 26 | 38 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.02014' Avg. expression score for this sample: '115.781' Avg. expression score in LCM sample: '42.1536' Tissue used: 'full endosperm' |
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| AT1G73380 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.23672 x 10-1 | 35 | 4 | 89.74% | 39 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |