| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G80300 | NTT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.7 x 10-14 | 195 | 19 | 91.12% | 214 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80300 | NTT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.96571 x 10-1 | 217 | 73 | 116 | 111 | 74.83% | 48.90% | 290 | 227 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.54447' Avg. expression score for this sample: '177.363' Avg. expression score in LCM sample: '212.444' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G80300 | NTT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 502 | 36 | 93.31% | 538 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80300 | NTT1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.7728 x 10-2 | 275 | 164 | 82 | 47 | 62.64% | 36.43% | 439 | 129 | TAIR8 |
Avg. embryo expression (dissected): '316.803' Avg. embryo expression (LCM): '251.511' |
|||
| AT1G80300 | NTT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.24374 x 10-1 | 361 | 131 | 190 | 382 | 73.37% | 66.78% | 492 | 572 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.54447' Avg. expression score for this sample: '278.797' Avg. expression score in LCM sample: '212.444' Tissue used: 'full endosperm' |
||||
| AT1G80300 | NTT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.3381 x 10-2 | 92 | 25 | 78.63% | 117 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80290 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.46525 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80290 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.9965 x 10-1 | 15 | 3 | 7 | 12 | 83.33% | 63.16% | 18 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '786.44' Avg. expression score in LCM sample: '286.639' Tissue used: 'full endosperm' |
|||||
| AT1G80290 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 5 | 3 | 3 | 3 | 62.50% | 50.00% | 8 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1590.11' Avg. expression score in LCM sample: '286.639' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G80290 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.94817 x 10-1 | 20 | 7 | 74.07% | 27 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80290 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 1 | 1 | 1 | 0.00% | 50.00% | 1 | 2 | TAIR8 |
Avg. embryo expression (dissected): '644.467' Avg. embryo expression (LCM): '214.526' |
||||
| AT1G80290 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 25 | 12 | 67.57% | 37 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80280 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.99039 x 10-1 | 35 | 21 | 62.50% | 56 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80280 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.6009 x 10-2 | 131 | 250 | 50 | 95 | 34.38% | 65.52% | 381 | 145 | TAIR8 |
Avg. embryo expression (dissected): '365.321' Avg. embryo expression (LCM): '412.059' |
||||
| AT1G80280 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.85174 x 10-1 | 75 | 31 | 61 | 135 | 70.75% | 68.88% | 106 | 196 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.259921' Avg. expression score for this sample: '84.0302' Avg. expression score in LCM sample: '368.815' Tissue used: 'full endosperm' |
|||||
| AT1G80280 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 36 | 16 | 69.23% | 52 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80280 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 27 | 11 | 71.05% | 38 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80280 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.11018 x 10-1 | 155 | 117 | 60 | 242 | 56.99% | 80.13% | 272 | 302 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.259921' Avg. expression score for this sample: '215.858' Avg. expression score in LCM sample: '368.815' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G80270 | PPR596 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.04764 x 10-1 | 10 | 3 | 4 | 15 | 76.92% | 78.95% | 13 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '60.2677' Avg. expression score in LCM sample: '27.0148' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G80270 | PPR596 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.58007 x 10-1 | 30 | 6 | 83.33% | 36 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80270 | PPR596 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.83247 x 10-1 | 21 | 31 | 3 | 5 | 40.38% | 62.50% | 52 | 8 | TAIR8 |
Avg. embryo expression (dissected): '154.971' Avg. embryo expression (LCM): '254.575' |
|||
| AT1G80270 | PPR596 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.89565 x 10-1 | 26 | 8 | 76.47% | 34 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80270 | PPR596 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.08841 x 10-1 | 1 | 3 | 25.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80270 | PPR596 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.04933 x 10-1 | 4 | 8 | 6 | 17 | 33.33% | 73.91% | 12 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '74.2618' Avg. expression score in LCM sample: '27.0148' Tissue used: 'full endosperm' |
||||
| AT1G80260 | emb1427 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.6254 x 10-2 | 144 | 26 | 49 | 72 | 84.71% | 59.50% | 170 | 121 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.106789' Avg. expression score for this sample: '85.7301' Avg. expression score in LCM sample: '50.1787' Tissue used: 'full endosperm' |
||||
| AT1G80260 | emb1427 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.90325 x 10-1 | 15 | 8 | 65.22% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80260 | emb1427 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.6022 x 10-2 | 47 | 10 | 82.46% | 57 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80260 | emb1427 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.41601 x 10-1 | 95 | 29 | 44 | 59 | 76.61% | 57.28% | 124 | 103 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.106789' Avg. expression score for this sample: '83.8869' Avg. expression score in LCM sample: '50.1787' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G80260 | emb1427 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.4 x 10-11 | 133 | 6 | 95.68% | 139 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80260 | emb1427 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.73708 x 10-1 | 116 | 65 | 43 | 17 | 64.09% | 28.33% | 181 | 60 | TAIR8 |
Avg. embryo expression (dissected): '148.156' Avg. embryo expression (LCM): '97.9946' |
|||
| AT1G80250 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT1G80250 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80250 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80250 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G80250 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT1G80250 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80245 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.8004 x 10-2 | 44 | 30 | 59.46% | 74 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80245 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.51898 x 10-1 | 27 | 6 | 17 | 13 | 81.82% | 43.33% | 33 | 30 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.529543' Avg. expression score for this sample: '47.0249' Avg. expression score in LCM sample: '7.12849' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G80245 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.193 x 10-3 | 67 | 9 | 88.16% | 76 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80245 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.18171 x 10-1 | 61 | 38 | 16 | 4 | 61.62% | 20.00% | 99 | 20 | TAIR8 |
Avg. embryo expression (dissected): '106.866' Avg. embryo expression (LCM): '94.4907' |
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| AT1G80245 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.31731 x 10-1 | 36 | 13 | 7 | 28 | 73.47% | 80.00% | 49 | 35 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.529543' Avg. expression score for this sample: '60.7101' Avg. expression score in LCM sample: '7.12849' Tissue used: 'full endosperm' |
|||||
| AT1G80245 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.29863 x 10-1 | 9 | 2 | 81.82% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80240 | DGR1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80240 | DGR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.24018' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G80240 | DGR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.396808' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80240 | DGR1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80240 | DGR1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.663339' Avg. embryo expression (LCM): '0' |
|||||
| AT1G80240 | DGR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80230 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80230 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '43.81' Avg. embryo expression (LCM): '94.8549' |
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| AT1G80230 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '78.6969' Avg. expression score in LCM sample: '37.5238' Tissue used: 'full endosperm' |
||||||
| AT1G80230 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80230 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.66667 x 10-1 | 2 | 2 | 50.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80230 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '37.68' Avg. expression score in LCM sample: '37.5238' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80220 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '9.58304' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80220 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 54 | 36 | 60.00% | 90 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80220 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.75703' Avg. embryo expression (LCM): '0' |
||||||
| AT1G80220 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 32 | 17 | 65.31% | 49 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80220 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80220 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 1 | 3 | 75.00% | 0 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.08949' Avg. expression score in LCM sample: '9.58304' Tissue used: 'full endosperm' |
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| AT1G80210 | BRCC36A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.33684 x 10-1 | 9 | 3 | 8 | 22 | 75.00% | 73.33% | 12 | 30 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.361428' Avg. expression score for this sample: '21.8428' Avg. expression score in LCM sample: '41.8744' Tissue used: 'full endosperm' |
||||
| AT1G80210 | BRCC36A | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.66358 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80210 | BRCC36A | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.68803 x 10-1 | 88 | 23 | 79.28% | 111 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80210 | BRCC36A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.68054 x 10-1 | 14 | 1 | 6 | 7 | 93.33% | 53.85% | 15 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.361428' Avg. expression score for this sample: '24.3493' Avg. expression score in LCM sample: '41.8744' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80210 | BRCC36A | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.06821 x 10-1 | 31 | 17 | 64.58% | 48 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80210 | BRCC36A | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.33213 x 10-1 | 11 | 5 | 1 | 3 | 68.75% | 75.00% | 16 | 4 | TAIR8 |
Avg. embryo expression (dissected): '32.5546' Avg. embryo expression (LCM): '23.6352' |
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| AT1G80200 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.46071 x 10-1 | 27 | 16 | 9 | 1 | 62.79% | 10.00% | 43 | 10 | TAIR8 |
Avg. embryo expression (dissected): '111.154' Avg. embryo expression (LCM): '141.535' |
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| AT1G80200 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.4 x 10-6 | 70 | 4 | 94.59% | 74 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80200 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80200 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.98387 x 10-1 | 15 | 4 | 9 | 5 | 78.95% | 35.71% | 19 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.580761' Avg. expression score for this sample: '22.2032' Avg. expression score in LCM sample: '29.3517' Tissue used: 'full endosperm' |
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| AT1G80200 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.91071 x 10-1 | 14 | 6 | 6 | 5 | 70.00% | 45.45% | 20 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.580761' Avg. expression score for this sample: '35.3019' Avg. expression score in LCM sample: '29.3517' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80200 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.01008 x 10-1 | 49 | 48 | 50.52% | 97 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80190 | PSF1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.6245 x 10-2 | 30 | 7 | 81.08% | 37 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80190 | PSF1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.28764 x 10-1 | 22 | 10 | 68.75% | 32 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80190 | PSF1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.41786 x 10-1 | 8 | 20 | 1 | 8 | 28.57% | 88.89% | 28 | 9 | TAIR8 |
Avg. embryo expression (dissected): '75.3854' Avg. embryo expression (LCM): '39.773' |
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| AT1G80190 | PSF1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 5 | 3 | 3 | 9 | 62.50% | 75.00% | 8 | 12 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.824848' Avg. expression score for this sample: '30.1741' Avg. expression score in LCM sample: '9.80351' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80190 | PSF1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.55643 x 10-1 | 3 | 4 | 7 | 10 | 42.86% | 58.82% | 7 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.824848' Avg. expression score for this sample: '22.4422' Avg. expression score in LCM sample: '9.80351' Tissue used: 'full endosperm' |
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| AT1G80190 | PSF1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.92322 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80180 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80180 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '13.83' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G80180 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80180 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '15.6309' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80180 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80180 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.766019' Avg. embryo expression (LCM): '4.9732' |
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| AT1G80170 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.08392 x 10-1 | 4 | 2 | 0 | 1 | 66.67% | 100.00% | 6 | 1 | TAIR8 |
Avg. embryo expression (dissected): '8.67719' Avg. embryo expression (LCM): '6.30441' |
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| AT1G80170 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.576471' Avg. expression score for this sample: '2.4309' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80170 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 9 | 0 | 100.00% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80170 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.76471 x 10-1 | 5 | 0 | 1 | 3 | 100.00% | 75.00% | 5 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.576471' Avg. expression score for this sample: '5.32804' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G80170 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80170 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80160 | GLYI7 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.427 x 10-3 | 178 | 21 | 89.45% | 199 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80160 | GLYI7 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.11234 x 10-1 | 212 | 60 | 77.94% | 272 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80160 | GLYI7 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.49677 x 10-1 | 9 | 23 | 0 | 5 | 28.12% | 100.00% | 32 | 5 | TAIR8 |
Avg. embryo expression (dissected): '354.534' Avg. embryo expression (LCM): '32.1625' |
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| AT1G80160 | GLYI7 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.00789 x 10-1 | 41 | 58 | 17 | 134 | 41.41% | 88.74% | 99 | 151 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.2e-10' Avg. expression score for this sample: '1675.45' Avg. expression score in LCM sample: '316.549' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80160 | GLYI7 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.6431 x 10-2 | 25 | 1 | 96.15% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80160 | GLYI7 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.3 x 10-14 | 98 | 43 | 19 | 329 | 69.50% | 94.54% | 141 | 348 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.2e-10' Avg. expression score for this sample: '1163.94' Avg. expression score in LCM sample: '316.549' Tissue used: 'full endosperm' |
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| AT1G80150 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.7615 x 10-1 | 44 | 4 | 31 | 34 | 91.67% | 52.31% | 48 | 65 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.799333' Avg. expression score for this sample: '31.2903' Avg. expression score in LCM sample: '12.2875' Tissue used: 'full endosperm' |
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| AT1G80150 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.0543 x 10-1 | 6 | 6 | 50.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80150 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.51551 x 10-1 | 35 | 23 | 60.34% | 58 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80150 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 17 | 5 | 4 | 3 | 77.27% | 42.86% | 22 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.799333' Avg. expression score for this sample: '15.2277' Avg. expression score in LCM sample: '12.2875' Tissue used: 'pure endosperm, no chalazal' |