| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G80620 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 2 | 66.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80620 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.32592 x 10-1 | 14 | 1 | 93.33% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80610 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.96378 x 10-1 | 37 | 4 | 90.24% | 41 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80610 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.69631 x 10-1 | 11 | 2 | 2 | 1 | 84.62% | 33.33% | 13 | 3 | TAIR8 |
Avg. embryo expression (dissected): '25.2407' Avg. embryo expression (LCM): '14.9573' |
||||
| AT1G80610 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.49185 x 10-1 | 11 | 0 | 100.00% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80610 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.9928 x 10-2 | 23 | 0 | 100.00% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80610 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.21739 x 10-1 | 8 | 0 | 1 | 4 | 100.00% | 80.00% | 8 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.04293' Avg. expression score for this sample: '15.3732' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80610 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.79044 x 10-1 | 14 | 8 | 2 | 28 | 63.64% | 93.33% | 22 | 30 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.04293' Avg. expression score for this sample: '61.5247' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT1G80600 | WIN1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.28965 x 10-1 | 103 | 45 | 48 | 88 | 69.59% | 64.71% | 148 | 136 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.894663' Avg. expression score for this sample: '571.645' Avg. expression score in LCM sample: '194.498' Tissue used: 'full endosperm' |
||||
| AT1G80600 | WIN1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.12521 x 10-1 | 13 | 7 | 65.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80600 | WIN1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.9 x 10-12 | 185 | 19 | 90.69% | 204 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80600 | WIN1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 85 | 48 | 28 | 70 | 63.91% | 71.43% | 133 | 98 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.894663' Avg. expression score for this sample: '387.778' Avg. expression score in LCM sample: '194.498' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G80600 | WIN1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.7 x 10-8 | 109 | 11 | 90.83% | 120 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80600 | WIN1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.00142 x 10-1 | 143 | 220 | 37 | 63 | 39.39% | 63.00% | 363 | 100 | TAIR8 |
Avg. embryo expression (dissected): '1260.39' Avg. embryo expression (LCM): '1086.52' |
|||
| AT1G80590 | WRKY66 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
|||||
| AT1G80590 | WRKY66 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT1G80590 | WRKY66 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80590 | WRKY66 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.513271' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT1G80590 | WRKY66 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80590 | WRKY66 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80580 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.13112' Avg. embryo expression (LCM): '3.26523' |
||||||
| AT1G80580 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.999017' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT1G80580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.09682' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT1G80570 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.65329 x 10-1 | 26 | 3 | 8 | 13 | 89.66% | 61.90% | 29 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.123273' Avg. expression score for this sample: '31.0534' Avg. expression score in LCM sample: '3.46871' Tissue used: 'full endosperm' |
|||||
| AT1G80570 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.32278 x 10-1 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80570 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.02955 x 10-1 | 22 | 1 | 95.65% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80570 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.81659 x 10-1 | 12 | 1 | 2 | 0 | 92.31% | 0.00% | 13 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.123273' Avg. expression score for this sample: '20.5767' Avg. expression score in LCM sample: '3.46871' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G80570 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.38774 x 10-1 | 20 | 2 | 90.91% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80570 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.37186 x 10-1 | 6 | 3 | 0 | 0 | 66.67% | 9 | 0 | TAIR8 |
Avg. embryo expression (dissected): '15.1122' Avg. embryo expression (LCM): '5.91509' |
|||||
| AT1G80560 | IMD2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.00323 x 10-1 | 3 | 7 | 1 | 0 | 30.00% | 0.00% | 10 | 1 | TAIR8 |
Avg. embryo expression (dissected): '50.8406' Avg. embryo expression (LCM): '43.3396' |
|||
| AT1G80560 | IMD2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 3 | 0 | 3 | 0.00% | 100.00% | 3 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.726652' Avg. expression score for this sample: '24.3649' Avg. expression score in LCM sample: '24.3397' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G80560 | IMD2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 1 | 66.67% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80560 | IMD2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.54596 x 10-1 | 20 | 6 | 18 | 21 | 76.92% | 53.85% | 26 | 39 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.726652' Avg. expression score for this sample: '32.4689' Avg. expression score in LCM sample: '24.3397' Tissue used: 'full endosperm' |
||||
| AT1G80560 | IMD2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.06931 x 10-1 | 23 | 6 | 79.31% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80560 | IMD2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.125 x 10-3 | 18 | 1 | 94.74% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80555 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80555 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT1G80555 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80555 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80555 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.09188' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT1G80555 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2.38607' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT1G80550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.99836 x 10-1 | 99 | 39 | 52 | 131 | 71.74% | 71.58% | 138 | 183 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.207103' Avg. expression score for this sample: '255.686' Avg. expression score in LCM sample: '88.6284' Tissue used: 'full endosperm' |
|||||
| AT1G80550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.4884 x 10-2 | 8 | 9 | 47.06% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80550 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.139 x 10-3 | 235 | 58 | 80.20% | 293 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.8111 x 10-1 | 35 | 19 | 13 | 35 | 64.81% | 72.92% | 54 | 48 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.207103' Avg. expression score for this sample: '209.768' Avg. expression score in LCM sample: '88.6284' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G80550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.64 x 10-4 | 218 | 43 | 83.52% | 261 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80550 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 33 | 37 | 19 | 25 | 47.14% | 56.82% | 70 | 44 | TAIR8 |
Avg. embryo expression (dissected): '334.691' Avg. embryo expression (LCM): '163.588' |
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| AT1G80540 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 17 | 24 | 10 | 18 | 41.46% | 64.29% | 41 | 28 | TAIR8 |
Avg. embryo expression (dissected): '123.801' Avg. embryo expression (LCM): '48.878' |
||||
| AT1G80540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.87928 x 10-1 | 358 | 157 | 207 | 445 | 69.51% | 68.25% | 515 | 652 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000112' Avg. expression score for this sample: '1528.76' Avg. expression score in LCM sample: '198.157' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G80540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.764 x 10-3 | 269 | 73 | 78.65% | 342 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.0 x 10-5 | 628 | 201 | 214 | 525 | 75.75% | 71.04% | 829 | 739 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000112' Avg. expression score for this sample: '993.977' Avg. expression score in LCM sample: '198.157' Tissue used: 'full endosperm' |
|||||
| AT1G80540 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.9 x 10-26 | 278 | 10 | 96.53% | 288 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.7 x 10-13 | 90 | 0 | 100.00% | 90 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80530 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.87875 x 10-1 | 5 | 6 | 45.45% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80530 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 x 10-7 | 54 | 1 | 98.18% | 55 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80530 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 26 | 27 | 9 | 9 | 49.06% | 50.00% | 53 | 18 | TAIR8 |
Avg. embryo expression (dissected): '217.751' Avg. embryo expression (LCM): '176.147' |
||||
| AT1G80530 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.64982 x 10-1 | 8 | 7 | 53.33% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80530 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.48016 x 10-1 | 50 | 17 | 37 | 72 | 74.63% | 66.06% | 67 | 109 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.71076' Avg. expression score for this sample: '479.518' Avg. expression score in LCM sample: '525.862' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G80530 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 86 | 23 | 55 | 73 | 78.90% | 57.03% | 109 | 128 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.71076' Avg. expression score for this sample: '408.435' Avg. expression score in LCM sample: '525.862' Tissue used: 'full endosperm' |
|||||
| AT1G80520 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.30769 x 10-1 | 3 | 0 | 0 | 4 | 100.00% | 100.00% | 3 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.230769' Avg. expression score for this sample: '2.09567' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT1G80520 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80520 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.230769' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT1G80520 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.993 x 10-2 | 3 | 3 | 50.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80520 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80520 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 1 | 0 | 1 | 0.00% | 100.00% | 1 | 1 | TAIR8 |
Avg. embryo expression (dissected): '2.29252' Avg. embryo expression (LCM): '0' |
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| AT1G80510 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.35052 x 10-1 | 11 | 3 | 0 | 1 | 78.57% | 100.00% | 14 | 1 | TAIR8 |
Avg. embryo expression (dissected): '18.3464' Avg. embryo expression (LCM): '7.74864' |
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| AT1G80510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | MEG | 3.55036 x 10-1 | 20 | 1 | 4 | 3 | 95.24% | 42.86% | 21 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000028' Avg. expression score for this sample: '22.0512' Avg. expression score in LCM sample: '20.4154' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | MEG | 1.7 x 10-5 | 30 | 1 | 2 | 34 | 96.77% | 94.44% | 31 | 36 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000028' Avg. expression score for this sample: '33.323' Avg. expression score in LCM sample: '20.4154' Tissue used: 'full endosperm' |
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| AT1G80510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.6807 x 10-2 | 8 | 3 | 72.73% | 11 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | ||||||||
| AT1G80510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.819 x 10-3 | 90 | 26 | 77.59% | 116 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | ||||||||
| AT1G80510 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.47117 x 10-1 | 187 | 11 | 94.44% | 198 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | ||||||||
| AT1G80500 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80500 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '110.22' Avg. embryo expression (LCM): '97.1406' |
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| AT1G80500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '88.2623' Avg. expression score in LCM sample: '46.1368' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '114.163' Avg. expression score in LCM sample: '46.1368' Tissue used: 'full endosperm' |
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| AT1G80490 | TPR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 6 | 6 | 8 | 26 | 50.00% | 76.47% | 12 | 34 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.601977' Avg. expression score for this sample: '152.825' Avg. expression score in LCM sample: '146.185' Tissue used: 'full endosperm' |
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| AT1G80490 | TPR1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.57376 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80490 | TPR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.7802 | 14 | 3 | 5 | 9 | 82.35% | 64.29% | 17 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.601977' Avg. expression score for this sample: '117.362' Avg. expression score in LCM sample: '146.185' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80490 | TPR1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.1898 x 10-1 | 24 | 5 | 82.76% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80490 | TPR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.59411 x 10-1 | 30 | 7 | 81.08% | 37 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80490 | TPR1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 9 | 9 | 4 | 2 | 50.00% | 33.33% | 18 | 6 | TAIR8 |
Avg. embryo expression (dissected): '116.754' Avg. embryo expression (LCM): '93.3353' |
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| AT1G80480 | PTAC17 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.56211 x 10-1 | 146 | 138 | 23 | 25 | 51.41% | 52.08% | 284 | 48 | TAIR8 |
Avg. embryo expression (dissected): '532.912' Avg. embryo expression (LCM): '600.589' |
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| AT1G80480 | PTAC17 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.51769 x 10-1 | 148 | 49 | 61 | 47 | 75.13% | 43.52% | 197 | 108 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.026011' Avg. expression score for this sample: '302.083' Avg. expression score in LCM sample: '137.881' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80480 | PTAC17 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.34 x 10-4 | 245 | 40 | 98 | 187 | 85.96% | 65.61% | 285 | 285 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.026011' Avg. expression score for this sample: '365.69' Avg. expression score in LCM sample: '137.881' Tissue used: 'full endosperm' |
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| AT1G80480 | PTAC17 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.98605 x 10-1 | 23 | 11 | 67.65% | 34 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80480 | PTAC17 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.8 x 10-13 | 219 | 17 | 92.80% | 236 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80480 | PTAC17 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.166 x 10-3 | 67 | 9 | 88.16% | 76 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.92308 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80470 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.6087 x 10-2 | 0 | 14 | 0.00% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80470 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.92992' Avg. embryo expression (LCM): '0' |
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| AT1G80470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.85714 x 10-1 | 0 | 2 | 1 | 1 | 0.00% | 50.00% | 2 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.240482' Avg. expression score for this sample: '2.81867' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.92075 x 10-1 | 2 | 4 | 0 | 1 | 33.33% | 100.00% | 6 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.240482' Avg. expression score for this sample: '3.15694' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G80460 | NHO1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.4 x 10-15 | 413 | 94 | 85 | 405 | 81.46% | 82.65% | 507 | 490 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '6.4e-16' Avg. expression score for this sample: '539.511' Avg. expression score in LCM sample: '119.538' Tissue used: 'full endosperm' |
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| AT1G80460 | NHO1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.466 x 10-3 | 191 | 28 | 87.21% | 219 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |