| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT1G80930 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.4471 x 10-2 | 6082 | 5881 | 2992 | 3158 | 50.84% | 51.35% | 11963 | 6150 | TAIR8 |
Avg. embryo expression (dissected): '4668.93' Avg. embryo expression (LCM): '1763' |
||||
| AT1G80930 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 18666 | 2969 | 86.28% | 21635 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80930 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 13482 | 4923 | 4630 | 11978 | 73.25% | 72.12% | 18405 | 16608 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '4022.62' Avg. expression score in LCM sample: '742.362' Tissue used: 'full endosperm' |
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| AT1G80930 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.0 x 10-6 | 1742 | 581 | 74.99% | 2323 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80920 | J8 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.58716 x 10-1 | 16 | 2 | 88.89% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80920 | J8 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.9507 x 10-2 | 59 | 11 | 84.29% | 70 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80920 | J8 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.06079 x 10-1 | 18 | 9 | 25 | 71 | 66.67% | 73.96% | 27 | 96 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.370808' Avg. expression score for this sample: '187.969' Avg. expression score in LCM sample: '67.5222' Tissue used: 'full endosperm' |
||||
| AT1G80920 | J8 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.642 x 10-3 | 30 | 30 | 50.00% | 60 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80920 | J8 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 7 | 4 | 2 | 5 | 63.64% | 71.43% | 11 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.370808' Avg. expression score for this sample: '282.156' Avg. expression score in LCM sample: '67.5222' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80920 | J8 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.08392 x 10-1 | 3 | 1 | 1 | 2 | 75.00% | 66.67% | 4 | 3 | TAIR8 |
Avg. embryo expression (dissected): '313.043' Avg. embryo expression (LCM): '75.4394' |
|||
| AT1G80910 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 34 | 38 | 16 | 18 | 47.22% | 52.94% | 72 | 34 | TAIR8 |
Avg. embryo expression (dissected): '109.928' Avg. embryo expression (LCM): '79.9228' |
||||
| AT1G80910 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.358 x 10-3 | 140 | 30 | 57 | 145 | 82.35% | 71.78% | 170 | 202 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002941' Avg. expression score for this sample: '143.36' Avg. expression score in LCM sample: '95.0661' Tissue used: 'full endosperm' |
|||||
| AT1G80910 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.55 x 10-4 | 26 | 27 | 49.06% | 53 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80910 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.6 x 10-7 | 355 | 48 | 88.09% | 403 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80910 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.38537 x 10-1 | 66 | 27 | 32 | 82 | 70.97% | 71.93% | 93 | 114 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002941' Avg. expression score for this sample: '103.955' Avg. expression score in LCM sample: '95.0661' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G80910 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.3814 x 10-1 | 387 | 142 | 73.16% | 529 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80900 | MGT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.6 x 10-8 | 106 | 6 | 94.64% | 112 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80900 | MGT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.33423 x 10-1 | 34 | 23 | 31 | 98 | 59.65% | 75.97% | 57 | 129 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.050894' Avg. expression score for this sample: '66.5234' Avg. expression score in LCM sample: '31.968' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G80900 | MGT1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.31606 x 10-1 | 38 | 56 | 13 | 20 | 40.43% | 60.61% | 94 | 33 | TAIR8 |
Avg. embryo expression (dissected): '66.6698' Avg. embryo expression (LCM): '61.6626' |
|||
| AT1G80900 | MGT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.9 x 10-17 | 203 | 7 | 96.67% | 210 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80900 | MGT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.9753 x 10-2 | 95 | 58 | 54 | 200 | 62.09% | 78.74% | 153 | 254 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.050894' Avg. expression score for this sample: '121.641' Avg. expression score in LCM sample: '31.968' Tissue used: 'full endosperm' |
||||
| AT1G80900 | MGT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.3706 x 10-1 | 28 | 6 | 82.35% | 34 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80890 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 2 | 80.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80890 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.3263 x 10-2 | 36 | 1 | 97.30% | 37 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80890 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.4569 x 10-2 | 18 | 0 | 4 | 10 | 100.00% | 71.43% | 18 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.216124' Avg. expression score for this sample: '224.398' Avg. expression score in LCM sample: '44.6082' Tissue used: 'full endosperm' |
|||||
| AT1G80890 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 6 | 0 | 4 | 1 | 100.00% | 20.00% | 6 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.216124' Avg. expression score for this sample: '196.383' Avg. expression score in LCM sample: '44.6082' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G80890 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.3798 x 10-2 | 8 | 6 | 57.14% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80890 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 5 | 1 | 3 | 1 | 83.33% | 25.00% | 6 | 4 | TAIR8 |
Avg. embryo expression (dissected): '197.538' Avg. embryo expression (LCM): '234.406' |
||||
| AT1G80880 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.57862 x 10-1 | 9 | 9 | 3 | 0 | 50.00% | 0.00% | 18 | 3 | TAIR8 |
Avg. embryo expression (dissected): '15.0033' Avg. embryo expression (LCM): '19.3653' |
||||
| AT1G80880 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.84078 x 10-1 | 4 | 0 | 4 | 13 | 100.00% | 76.47% | 4 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.07781' Avg. expression score for this sample: '10.1352' Avg. expression score in LCM sample: '1.80784' Tissue used: 'full endosperm' |
|||||
| AT1G80880 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80880 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 23 | 4 | 85.19% | 27 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80880 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.5575 x 10-1 | 10 | 0 | 100.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80880 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.02941 x 10-1 | 4 | 0 | 0 | 5 | 100.00% | 100.00% | 4 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.07781' Avg. expression score for this sample: '5.73496' Avg. expression score in LCM sample: '1.80784' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G80870 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.6718 x 10-2 | 48 | 43 | 22 | 37 | 52.75% | 62.71% | 91 | 59 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.669571' Avg. expression score for this sample: '144.61' Avg. expression score in LCM sample: '31.3507' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT1G80870 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.8 x 10-19 | 323 | 32 | 90.99% | 355 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80870 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 135 | 184 | 47 | 95 | 42.32% | 66.90% | 319 | 142 | TAIR8 |
Avg. embryo expression (dissected): '744.43' Avg. embryo expression (LCM): '302.524' |
||||
| AT1G80870 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.6 x 10-8 | 139 | 18 | 88.54% | 157 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80870 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.68753 x 10-1 | 136 | 75 | 117 | 319 | 64.45% | 73.17% | 211 | 436 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.669571' Avg. expression score for this sample: '221.302' Avg. expression score in LCM sample: '31.3507' Tissue used: 'full endosperm' |
|||||
| AT1G80870 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.7032 x 10-2 | 17 | 2 | 89.47% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80865 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80865 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.232446' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT1G80865 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80865 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80865 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80865 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.403785' Avg. embryo expression (LCM): '0' |
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| AT1G80860 | PLMT | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.01896 x 10-1 | 64 | 18 | 32 | 14 | 78.05% | 30.43% | 82 | 46 | TAIR8 |
Avg. embryo expression (dissected): '413.778' Avg. embryo expression (LCM): '308.301' |
|||
| AT1G80860 | PLMT | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.7 x 10-21 | 205 | 3 | 98.56% | 208 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80860 | PLMT | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.89662 x 10-1 | 41 | 14 | 29 | 16 | 74.55% | 35.56% | 55 | 45 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '347.774' Avg. expression score in LCM sample: '268.84' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80860 | PLMT | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.98309 x 10-1 | 62 | 26 | 70.45% | 88 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80860 | PLMT | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.10958 x 10-1 | 74 | 17 | 23 | 39 | 81.32% | 62.90% | 91 | 62 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '402.691' Avg. expression score in LCM sample: '268.84' Tissue used: 'full endosperm' |
||||
| AT1G80860 | PLMT | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.46823 x 10-1 | 4 | 4 | 50.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80850 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.53887 x 10-1 | 1 | 2 | 33.33% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80850 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 2 | 60.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80850 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 10 | 5 | 4 | 5 | 66.67% | 55.56% | 15 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.84768' Avg. expression score for this sample: '25.1432' Avg. expression score in LCM sample: '18.0196' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80850 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 7 | 8 | 5 | 15 | 46.67% | 75.00% | 15 | 20 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.84768' Avg. expression score for this sample: '21.9326' Avg. expression score in LCM sample: '18.0196' Tissue used: 'full endosperm' |
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| AT1G80850 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 8 | 8 | 0 | 1 | 50.00% | 100.00% | 16 | 1 | TAIR8 |
Avg. embryo expression (dissected): '43.2859' Avg. embryo expression (LCM): '47.9863' |
||||
| AT1G80850 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80840 | WRKY40 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.6304 x 10-2 | 108 | 9 | 92.31% | 117 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80840 | WRKY40 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.3108 x 10-2 | 12 | 16 | 7 | 84 | 42.86% | 92.31% | 28 | 91 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.005664' Avg. expression score for this sample: '47.3299' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||
| AT1G80840 | WRKY40 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.649 x 10-3 | 30 | 0 | 100.00% | 30 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80840 | WRKY40 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80840 | WRKY40 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.31989 x 10-1 | 12 | 2 | 0 | 5 | 85.71% | 100.00% | 14 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.005664' Avg. expression score for this sample: '10.3856' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT1G80840 | WRKY40 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 6 | 6 | 1 | 0 | 50.00% | 0.00% | 12 | 1 | TAIR8 |
Avg. embryo expression (dissected): '8.10675' Avg. embryo expression (LCM): '5.2746' |
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| AT1G80831 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT1G80831 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80831 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT1G80831 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80831 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G80831 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT1G80830 | NRAMP1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.70749 x 10-1 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80830 | NRAMP1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.943 x 10-3 | 45 | 1 | 97.83% | 46 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80830 | NRAMP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.5671 | 0 | 3 | 1 | 2 | 0.00% | 66.67% | 3 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.180344' Avg. expression score for this sample: '19.3843' Avg. expression score in LCM sample: '21.7235' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80830 | NRAMP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.2397 x 10-2 | 17 | 2 | 4 | 20 | 89.47% | 83.33% | 19 | 24 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.180344' Avg. expression score for this sample: '38.772' Avg. expression score in LCM sample: '21.7235' Tissue used: 'full endosperm' |
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| AT1G80830 | NRAMP1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 4 | 1 | 3 | 0 | 80.00% | 0.00% | 5 | 3 | TAIR8 |
Avg. embryo expression (dissected): '36.6305' Avg. embryo expression (LCM): '20.6212' |
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| AT1G80830 | NRAMP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.06 x 10-4 | 84 | 2 | 97.67% | 86 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80820 | CCR2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.31061 x 10-1 | 28 | 1 | 96.55% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80820 | CCR2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 0 | 0 | 3 | 100.00% | 0 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.57884' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT1G80820 | CCR2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.24599 x 10-1 | 29 | 1 | 96.67% | 30 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80820 | CCR2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80820 | CCR2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.40336' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80820 | CCR2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '4.30131' Avg. embryo expression (LCM): '0' |
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| AT1G80810 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.68616 x 10-1 | 69 | 47 | 10 | 7 | 59.48% | 41.18% | 116 | 17 | TAIR8 |
Avg. embryo expression (dissected): '313.953' Avg. embryo expression (LCM): '83.0247' |
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| AT1G80810 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.3 x 10-8 | 83 | 4 | 95.40% | 87 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80810 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.55527 x 10-1 | 67 | 34 | 49 | 78 | 66.34% | 61.42% | 101 | 127 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.201327' Avg. expression score for this sample: '305.372' Avg. expression score in LCM sample: '13.4486' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80810 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.32 x 10-4 | 42 | 3 | 93.33% | 45 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80810 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.5884 x 10-2 | 115 | 26 | 42 | 103 | 81.56% | 71.03% | 141 | 145 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.201327' Avg. expression score for this sample: '316.035' Avg. expression score in LCM sample: '13.4486' Tissue used: 'full endosperm' |
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| AT1G80810 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 2 | 71.43% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80790 | FDM5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.57655 x 10-1 | 29 | 10 | 74.36% | 39 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80790 | FDM5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.2 x 10-5 | 257 | 51 | 83.44% | 308 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80790 | FDM5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.82053 x 10-1 | 104 | 76 | 58 | 173 | 57.78% | 74.89% | 180 | 231 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001912' Avg. expression score for this sample: '1144.26' Avg. expression score in LCM sample: '202.052' Tissue used: 'pure endosperm, no chalazal' |
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| AT1G80790 | FDM5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.53 x 10-4 | 283 | 87 | 130 | 360 | 76.49% | 73.47% | 370 | 490 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001912' Avg. expression score for this sample: '1234.8' Avg. expression score in LCM sample: '202.052' Tissue used: 'full endosperm' |
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| AT1G80790 | FDM5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.61817 x 10-1 | 95 | 108 | 21 | 39 | 46.80% | 65.00% | 203 | 60 | TAIR8 |
Avg. embryo expression (dissected): '1349.99' Avg. embryo expression (LCM): '762.996' |
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| AT1G80790 | FDM5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.2 x 10-19 | 384 | 32 | 92.31% | 416 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT1G80780 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.3392 x 10-1 | 17 | 3 | 85.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80780 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 21 | 5 | 8 | 9 | 80.77% | 52.94% | 26 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '48.3409' Avg. expression score in LCM sample: '23.9429' Tissue used: 'full endosperm' |
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| AT1G80780 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.90873 x 10-1 | 14 | 8 | 63.64% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80780 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 2 | 75.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT1G80780 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 4 | 2 | 1 | 0 | 66.67% | 0.00% | 6 | 1 | TAIR8 |
Avg. embryo expression (dissected): '58.3074' Avg. embryo expression (LCM): '57.9578' |
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| AT1G80780 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 3 | 1 | 100.00% | 25.00% | 2 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '45.8222' Avg. expression score in LCM sample: '23.9429' Tissue used: 'pure endosperm, no chalazal' |