| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT2G01730 | CPSF73-II | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.90174 x 10-1 | 32 | 13 | 71.11% | 45 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G01730 | CPSF73-II | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.85062 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G01730 | CPSF73-II | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 8 | 8 | 1 | 1 | 50.00% | 50.00% | 16 | 2 | TAIR8 |
Avg. embryo expression (dissected): '9.80096' Avg. embryo expression (LCM): '14.7061' |
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| AT2G01730 | CPSF73-II | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 2 | 2 | 100.00% | 50.00% | 2 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.835156' Avg. expression score for this sample: '3.14496' Avg. expression score in LCM sample: '2.1459' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G01730 | CPSF73-II | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.24848 x 10-1 | 12 | 9 | 8 | 15 | 57.14% | 65.22% | 21 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.835156' Avg. expression score for this sample: '8.8295' Avg. expression score in LCM sample: '2.1459' Tissue used: 'full endosperm' |
||||
| AT2G01730 | CPSF73-II | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.26702 x 10-1 | 22 | 7 | 75.86% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G01720 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1954 | 152 | 92.78% | 2106 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01720 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.24785 x 10-1 | 316 | 87 | 166 | 238 | 78.41% | 58.91% | 403 | 404 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.007047' Avg. expression score for this sample: '346.763' Avg. expression score in LCM sample: '301.689' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G01720 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.4384 x 10-2 | 309 | 209 | 124 | 100 | 59.65% | 44.64% | 518 | 224 | TAIR8 |
Avg. embryo expression (dissected): '473.214' Avg. embryo expression (LCM): '310.662' |
||||
| AT2G01720 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.666 x 10-3 | 643 | 174 | 379 | 694 | 78.70% | 64.68% | 817 | 1073 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.007047' Avg. expression score for this sample: '569.631' Avg. expression score in LCM sample: '301.689' Tissue used: 'full endosperm' |
|||||
| AT2G01720 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.2 x 10-7 | 1164 | 335 | 77.65% | 1499 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01720 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.3597 x 10-2 | 151 | 41 | 78.65% | 192 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01710 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.484 x 10-2 | 52 | 40 | 56.52% | 92 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01710 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.5935 x 10-1 | 235 | 132 | 104 | 319 | 64.03% | 75.41% | 367 | 423 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.197343' Avg. expression score for this sample: '544.145' Avg. expression score in LCM sample: '250.57' Tissue used: 'full endosperm' |
|||||
| AT2G01710 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.94917 x 10-1 | 151 | 107 | 67 | 211 | 58.53% | 75.90% | 258 | 278 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.197343' Avg. expression score for this sample: '656.911' Avg. expression score in LCM sample: '250.57' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G01710 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.4 x 10-12 | 220 | 26 | 89.43% | 246 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01710 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.4009 x 10-1 | 114 | 138 | 37 | 65 | 45.24% | 63.73% | 252 | 102 | TAIR8 |
Avg. embryo expression (dissected): '701.42' Avg. embryo expression (LCM): '681.956' |
||||
| AT2G01710 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.1 x 10-7 | 138 | 20 | 87.34% | 158 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01690 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.84916 x 10-1 | 356 | 192 | 64.96% | 548 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01690 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.04871 x 10-1 | 49 | 26 | 65.33% | 75 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01690 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.21638 x 10-1 | 316 | 366 | 198 | 216 | 46.33% | 52.17% | 682 | 414 | TAIR8 |
Avg. embryo expression (dissected): '506.89' Avg. embryo expression (LCM): '123.463' |
||||
| AT2G01690 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.9681 x 10-2 | 729 | 429 | 538 | 960 | 62.95% | 64.09% | 1158 | 1498 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.868363' Avg. expression score for this sample: '675.583' Avg. expression score in LCM sample: '118.671' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G01690 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.34 x 10-4 | 646 | 225 | 140 | 352 | 74.17% | 71.54% | 871 | 492 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.868363' Avg. expression score for this sample: '300.126' Avg. expression score in LCM sample: '118.671' Tissue used: 'full endosperm' |
|||||
| AT2G01690 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.2 x 10-29 | 456 | 55 | 89.24% | 511 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01680 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G01680 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '60.4349' Avg. expression score in LCM sample: '10.0828' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT2G01680 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '96.151' Avg. embryo expression (LCM): '51.1008' |
||||||
| AT2G01680 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '102.291' Avg. expression score in LCM sample: '10.0828' Tissue used: 'full endosperm' |
|||||||
| AT2G01680 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G01680 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G01670 | NUDT17 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G01670 | NUDT17 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.1 x 10-11 | 19 | 0 | 1 | 82 | 100.00% | 98.80% | 19 | 83 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '9.1e-11' Avg. expression score for this sample: '50.0315' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||
| AT2G01670 | NUDT17 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '9.1e-11' Avg. expression score for this sample: '2.78435' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G01670 | NUDT17 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 0 | 100.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G01670 | NUDT17 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
|||||
| AT2G01670 | NUDT17 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 12 | 0 | 100.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G01667 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G01667 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G01667 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '15.9941' Avg. embryo expression (LCM): '0' |
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| AT2G01667 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '403.635' Avg. expression score in LCM sample: '1338.82' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G01667 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '59.8439' Avg. expression score in LCM sample: '1338.82' Tissue used: 'full endosperm' |
|||||||
| AT2G01667 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G01660 | PDLP6 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 105 | 1 | 99.06% | 106 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G01660 | PDLP6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 3 | 100.00% | 100.00% | 1 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.6e-18' Avg. expression score for this sample: '52.3727' Avg. expression score in LCM sample: '4.42407' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G01660 | PDLP6 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '8.57104' Avg. embryo expression (LCM): '3.78013' |
|||||
| AT2G01660 | PDLP6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.6 x 10-18 | 42 | 2 | 0 | 132 | 95.45% | 100.00% | 44 | 132 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.6e-18' Avg. expression score for this sample: '102.826' Avg. expression score in LCM sample: '4.42407' Tissue used: 'full endosperm' |
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| AT2G01660 | PDLP6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 77 | 0 | 100.00% | 77 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G01660 | PDLP6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 17 | 0 | 100.00% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G01650 | PUX2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.09176 x 10-1 | 10 | 0 | 100.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G01650 | PUX2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.0 x 10-6 | 29 | 8 | 8 | 99 | 78.38% | 92.52% | 37 | 107 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000031' Avg. expression score for this sample: '113.629' Avg. expression score in LCM sample: '52.4863' Tissue used: 'full endosperm' |
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| AT2G01650 | PUX2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 1 | 2 | 2 | 50.00% | 50.00% | 2 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000031' Avg. expression score for this sample: '29.7458' Avg. expression score in LCM sample: '52.4863' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G01650 | PUX2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.8103 x 10-2 | 68 | 18 | 79.07% | 86 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G01650 | PUX2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 1 | 0 | 2 | 50.00% | 100.00% | 2 | 2 | TAIR8 |
Avg. embryo expression (dissected): '24.0947' Avg. embryo expression (LCM): '28.8847' |
|||
| AT2G01650 | PUX2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.11169 x 10-1 | 117 | 14 | 89.31% | 131 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G01640 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.3088 x 10-2 | 12 | 1 | 92.31% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01640 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.60153 x 10-1 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01640 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.8329 x 10-2 | 21 | 8 | 6 | 11 | 72.41% | 64.71% | 29 | 17 | TAIR8 |
Avg. embryo expression (dissected): '70.87' Avg. embryo expression (LCM): '56.1494' |
||||
| AT2G01640 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.80788 x 10-1 | 6 | 6 | 5 | 11 | 50.00% | 68.75% | 12 | 16 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.858272' Avg. expression score for this sample: '31.5852' Avg. expression score in LCM sample: '13.1399' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G01640 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 15 | 9 | 5 | 12 | 62.50% | 70.59% | 24 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.858272' Avg. expression score for this sample: '24.2333' Avg. expression score in LCM sample: '13.1399' Tissue used: 'full endosperm' |
|||||
| AT2G01640 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.59 x 10-4 | 26 | 1 | 96.30% | 27 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01630 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.9 x 10-8 | 248 | 56 | 81.58% | 304 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01630 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.63254 x 10-1 | 110 | 87 | 49 | 147 | 55.84% | 75.00% | 197 | 196 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.55141' Avg. expression score for this sample: '193.741' Avg. expression score in LCM sample: '165.337' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G01630 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.1723 x 10-1 | 201 | 184 | 99 | 112 | 52.21% | 53.08% | 385 | 211 | TAIR8 |
Avg. embryo expression (dissected): '591.354' Avg. embryo expression (LCM): '468.096' |
||||
| AT2G01630 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.40165 x 10-1 | 124 | 95 | 34 | 112 | 56.62% | 76.71% | 219 | 146 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.55141' Avg. expression score for this sample: '160.701' Avg. expression score in LCM sample: '165.337' Tissue used: 'full endosperm' |
|||||
| AT2G01630 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.55576 x 10-1 | 136 | 62 | 68.69% | 198 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01630 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.0922 x 10-2 | 36 | 9 | 80.00% | 45 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01620 | MEE11 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01620 | MEE11 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 4 | 4 | 1 | 7 | 50.00% | 87.50% | 8 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '489.077' Avg. expression score in LCM sample: '211.209' Tissue used: 'full endosperm' |
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| AT2G01620 | MEE11 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 1 | 1 | 2 | 50.00% | 66.67% | 2 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '740.302' Avg. expression score in LCM sample: '211.209' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G01620 | MEE11 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.62 x 10-3 | 20 | 0 | 100.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G01620 | MEE11 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 2 | 1 | 1 | 0.00% | 50.00% | 2 | 2 | TAIR8 |
Avg. embryo expression (dissected): '439.982' Avg. embryo expression (LCM): '131.35' |
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| AT2G01620 | MEE11 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.7419 x 10-1 | 8 | 1 | 88.89% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G01610 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.18375 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01610 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.18887 x 10-1 | 146 | 113 | 56.37% | 259 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01610 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.1821 x 10-2 | 36 | 11 | 12 | 8 | 76.60% | 40.00% | 47 | 20 | TAIR8 |
Avg. embryo expression (dissected): '62.2333' Avg. embryo expression (LCM): '20.8598' |
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| AT2G01610 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.4 x 10-4 | 499 | 244 | 432 | 529 | 67.16% | 55.05% | 743 | 961 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '4.1e-07' Avg. expression score for this sample: '955.245' Avg. expression score in LCM sample: '944.047' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G01610 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.24 x 10-4 | 102 | 49 | 253 | 313 | 67.55% | 55.30% | 151 | 566 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '4.1e-07' Avg. expression score for this sample: '215.538' Avg. expression score in LCM sample: '944.047' Tissue used: 'full endosperm' |
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| AT2G01610 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.186 x 10-2 | 15 | 3 | 83.33% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01600 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.0 x 10-11 | 301 | 41 | 88.01% | 342 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.64695 x 10-1 | 235 | 152 | 149 | 440 | 60.72% | 74.70% | 387 | 589 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.005823' Avg. expression score for this sample: '535.678' Avg. expression score in LCM sample: '278.364' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G01600 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.05536 x 10-1 | 145 | 155 | 76 | 104 | 48.33% | 57.78% | 300 | 180 | TAIR8 |
Avg. embryo expression (dissected): '413.879' Avg. embryo expression (LCM): '121.303' |
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| AT2G01600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.41 x 10-3 | 190 | 52 | 53 | 153 | 78.51% | 74.27% | 242 | 206 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.005823' Avg. expression score for this sample: '225.174' Avg. expression score in LCM sample: '278.364' Tissue used: 'full endosperm' |
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| AT2G01600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.2 x 10-5 | 305 | 68 | 81.77% | 373 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.80797 x 10-1 | 46 | 20 | 69.70% | 66 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01590 | CRR3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01590 | CRR3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 2 | 100.00% | 100.00% | 1 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '4.57499' Avg. expression score in LCM sample: '1.48449' Tissue used: 'full endosperm' |
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| AT2G01590 | CRR3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.14141' Avg. expression score in LCM sample: '1.48449' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G01590 | CRR3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01590 | CRR3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.28571 x 10-1 | 0 | 0 | 0 | 3 | 100.00% | 0 | 3 | TAIR8 |
Avg. embryo expression (dissected): '29.7318' Avg. embryo expression (LCM): '17.8332' |
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| AT2G01590 | CRR3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.926 x 10-3 | 45 | 2 | 95.74% | 47 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.89458 x 10-1 | 16 | 1 | 94.12% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01580 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 1 | 0 | 1 | 0.00% | 100.00% | 1 | 1 | TAIR8 |
Avg. embryo expression (dissected): '31.9989' Avg. embryo expression (LCM): '8.75333' |
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| AT2G01580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.23359 x 10-1 | 28 | 8 | 7 | 16 | 77.78% | 69.57% | 36 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.066692' Avg. expression score for this sample: '628.056' Avg. expression score in LCM sample: '71.6964' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G01580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.47687 x 10-1 | 9 | 3 | 5 | 29 | 75.00% | 85.29% | 12 | 34 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.066692' Avg. expression score for this sample: '400.651' Avg. expression score in LCM sample: '71.6964' Tissue used: 'full endosperm' |
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| AT2G01580 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.9 x 10-5 | 51 | 0 | 100.00% | 51 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G01570 | RGA1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.5 x 10-29 | 290 | 5 | 98.31% | 295 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G01570 | RGA1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.3893 x 10-1 | 352 | 80 | 214 | 222 | 81.48% | 50.92% | 432 | 436 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000077' Avg. expression score for this sample: '179.974' Avg. expression score in LCM sample: '33.2173' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G01570 | RGA1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.06 x 10-4 | 337 | 214 | 113 | 125 | 61.16% | 52.52% | 551 | 238 | TAIR8 |
Avg. embryo expression (dissected): '273.435' Avg. embryo expression (LCM): '137.542' |
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| AT2G01570 | RGA1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.7 x 10-10 | 416 | 53 | 96 | 211 | 88.70% | 68.73% | 469 | 307 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000077' Avg. expression score for this sample: '169.786' Avg. expression score in LCM sample: '33.2173' Tissue used: 'full endosperm' |