| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT2G06040 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.55505 x 10-1 | 484 | 235 | 67.32% | 719 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G06040 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.62 x 10-3 | 13 | 17 | 43.33% | 30 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G06025 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 9 | 4 | 69.23% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G06025 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.4 x 10-5 | 31 | 0 | 100.00% | 31 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G06025 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.39009 x 10-1 | 14 | 10 | 58.33% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G06025 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.24116 x 10-1 | 39 | 5 | 20 | 24 | 88.64% | 54.55% | 44 | 44 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.77705' Avg. expression score for this sample: '118.737' Avg. expression score in LCM sample: '33.1291' Tissue used: 'full endosperm' |
|||||
| AT2G06025 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.7337 x 10-1 | 10 | 3 | 1 | 1 | 76.92% | 50.00% | 13 | 2 | TAIR8 |
Avg. embryo expression (dissected): '80.4447' Avg. embryo expression (LCM): '68.1052' |
||||
| AT2G06025 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 11 | 2 | 8 | 6 | 84.62% | 42.86% | 13 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.77705' Avg. expression score for this sample: '77.3593' Avg. expression score in LCM sample: '33.1291' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G06020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 2 | 0 | 0 | 0.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.569179' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT2G06020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 9 | 0 | 4 | 2 | 100.00% | 33.33% | 9 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '12.5624' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT2G06020 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT2G06020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G06020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G06020 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G06010 | ORG4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.88648 x 10-1 | 24 | 3 | 88.89% | 27 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G06010 | ORG4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.9255 x 10-2 | 39 | 3 | 92.86% | 42 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G06010 | ORG4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 2 | 77.78% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G06010 | ORG4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.96107 x 10-1 | 13 | 13 | 4 | 0 | 50.00% | 0.00% | 26 | 4 | TAIR8 |
Avg. embryo expression (dissected): '120.914' Avg. embryo expression (LCM): '124.857' |
|||
| AT2G06010 | ORG4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 10 | 9 | 2 | 11 | 52.63% | 84.62% | 19 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.209041' Avg. expression score for this sample: '76.0529' Avg. expression score in LCM sample: '51.575' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G06010 | ORG4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.1654 x 10-2 | 11 | 9 | 4 | 43 | 55.00% | 91.49% | 20 | 47 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.209041' Avg. expression score for this sample: '97.6089' Avg. expression score in LCM sample: '51.575' Tissue used: 'full endosperm' |
||||
| AT2G06005 | FIP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 42 | 13 | 20 | 23 | 76.36% | 53.49% | 55 | 43 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.304227' Avg. expression score for this sample: '16.1735' Avg. expression score in LCM sample: '15.6092' Tissue used: 'full endosperm' |
||||
| AT2G06005 | FIP1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.89414 x 10-1 | 30 | 11 | 17 | 10 | 73.17% | 37.04% | 41 | 27 | TAIR8 |
Avg. embryo expression (dissected): '32.1369' Avg. embryo expression (LCM): '24.6274' |
|||
| AT2G06005 | FIP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.94745 x 10-1 | 59 | 23 | 39 | 31 | 71.95% | 44.29% | 82 | 70 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.304227' Avg. expression score for this sample: '40.7455' Avg. expression score in LCM sample: '15.6092' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G06005 | FIP1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.436 x 10-3 | 8 | 16 | 33.33% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G06005 | FIP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.5 x 10-9 | 47 | 0 | 100.00% | 47 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G06005 | FIP1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.8195 x 10-2 | 8 | 0 | 100.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G06002 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G06002 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G06002 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G06002 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '11.6951' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT2G06002 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 3 | 100.00% | 0 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.74275' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT2G06002 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '1.78332' |
||||||
| AT2G06000 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.08718 x 10-1 | 45 | 71 | 8 | 19 | 38.79% | 70.37% | 116 | 27 | TAIR8 |
Avg. embryo expression (dissected): '133.873' Avg. embryo expression (LCM): '116.669' |
||||
| AT2G06000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.61247 x 10-1 | 33 | 19 | 13 | 45 | 63.46% | 77.59% | 52 | 58 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.136847' Avg. expression score for this sample: '66.0385' Avg. expression score in LCM sample: '56.4694' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G06000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.9149 x 10-1 | 84 | 22 | 42 | 87 | 79.25% | 67.44% | 106 | 129 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.136847' Avg. expression score for this sample: '137.956' Avg. expression score in LCM sample: '56.4694' Tissue used: 'full endosperm' |
|||||
| AT2G06000 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.1 x 10-6 | 122 | 12 | 91.04% | 134 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G06000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.84 x 10-4 | 109 | 17 | 86.51% | 126 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G06000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.56694 x 10-1 | 21 | 6 | 77.78% | 27 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G05995 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.8 x 10-6 | 0 | 12 | 0.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G05995 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.10084 x 10-1 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G05995 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G05995 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.9935 x 10-1 | 22 | 4 | 0 | 0 | 84.62% | 26 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.407547' Avg. expression score for this sample: '15.3586' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT2G05995 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 4 | 2 | 1 | 0 | 66.67% | 0.00% | 6 | 1 | TAIR8 |
Avg. embryo expression (dissected): '13.6194' Avg. embryo expression (LCM): '0' |
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| AT2G05995 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 3 | 0 | 2 | 40.00% | 100.00% | 5 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.407547' Avg. expression score for this sample: '3.92149' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G05990 | MOD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.458 x 10-3 | 659 | 392 | 325 | 506 | 62.70% | 60.89% | 1051 | 831 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000027' Avg. expression score for this sample: '498.8' Avg. expression score in LCM sample: '282.156' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G05990 | MOD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.661 x 10-3 | 465 | 255 | 437 | 665 | 64.58% | 60.34% | 720 | 1102 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000027' Avg. expression score for this sample: '419.379' Avg. expression score in LCM sample: '282.156' Tissue used: 'full endosperm' |
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| AT2G05990 | MOD1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.27895 x 10-1 | 1367 | 1534 | 243 | 282 | 47.12% | 53.71% | 2901 | 525 | TAIR8 |
Avg. embryo expression (dissected): '1222.96' Avg. embryo expression (LCM): '1171.55' |
|||
| AT2G05990 | MOD1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.48 x 10-3 | 143 | 54 | 72.59% | 197 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G05990 | MOD1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.6 x 10-6 | 129 | 34 | 79.14% | 163 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G05990 | MOD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.3 x 10-11 | 218 | 50 | 81.34% | 268 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G05970 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G05970 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 2 | 66.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G05970 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G05970 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT2G05970 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G05970 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT2G05940 | RIPK | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '10.7168' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT2G05940 | RIPK | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.2381 x 10-1 | 4 | 1 | 0 | 0 | 80.00% | 5 | 0 | TAIR8 |
Avg. embryo expression (dissected): '29.0755' Avg. embryo expression (LCM): '.740956' |
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| AT2G05940 | RIPK | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.62664' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G05940 | RIPK | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.33333 x 10-1 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G05940 | RIPK | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 16 | 1 | 94.12% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G05940 | RIPK | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G05920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.9 x 10-5 | 656 | 225 | 74.46% | 881 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G05920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 2422 | 525 | 82.19% | 2947 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G05920 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.6 x 10-25 | 1132 | 269 | 80.80% | 1401 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G05920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.28486 x 10-1 | 1218 | 1296 | 985 | 3599 | 48.45% | 78.51% | 2514 | 4584 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000333' Avg. expression score for this sample: '3579.57' Avg. expression score in LCM sample: '1934.29' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G05920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.053 x 10-3 | 3247 | 3954 | 2112 | 9787 | 45.09% | 82.25% | 7201 | 11899 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000333' Avg. expression score for this sample: '4162.34' Avg. expression score in LCM sample: '1934.29' Tissue used: 'full endosperm' |
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| AT2G05920 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.22306 x 10-1 | 581 | 670 | 232 | 281 | 46.44% | 54.78% | 1251 | 513 | TAIR8 |
Avg. embryo expression (dissected): '1453.34' Avg. embryo expression (LCM): '1137.57' |
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| AT2G05915 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.831867' Avg. embryo expression (LCM): '0' |
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| AT2G05915 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.1073 x 10-2 | 11 | 0 | 0 | 4 | 100.00% | 100.00% | 11 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001823' Avg. expression score for this sample: '14.0064' Avg. expression score in LCM sample: '21.0621' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G05915 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.7826 x 10-2 | 8 | 0 | 0 | 5 | 100.00% | 100.00% | 8 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001823' Avg. expression score for this sample: '9.6127' Avg. expression score in LCM sample: '21.0621' Tissue used: 'full endosperm' |
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| AT2G05915 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G05915 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G05915 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.5 x 10-5 | 2 | 5 | 28.57% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G05910 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.5876 x 10-2 | 33 | 5 | 86.84% | 38 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G05910 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.80625 x 10-1 | 90 | 1 | 98.90% | 91 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G05910 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 15 | 0 | 100.00% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G05910 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.2 x 10-26 | 113 | 6 | 6 | 223 | 94.96% | 97.38% | 119 | 229 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '4.0e-28' Avg. expression score for this sample: '414.628' Avg. expression score in LCM sample: '5.45293' Tissue used: 'full endosperm' |
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| AT2G05910 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.28064' Avg. embryo expression (LCM): '0' |
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| AT2G05910 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.7826 x 10-2 | 11 | 0 | 0 | 2 | 100.00% | 100.00% | 11 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '4.0e-28' Avg. expression score for this sample: '21.0308' Avg. expression score in LCM sample: '5.45293' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G05900 | SDG11 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.273364' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G05900 | SDG11 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '6.84095' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT2G05900 | SDG11 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT2G05900 | SDG11 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G05900 | SDG11 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G05900 | SDG11 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G05850 | scpl38 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.96753 x 10-1 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G05850 | scpl38 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.275 x 10-3 | 5 | 26 | 16.13% | 31 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G05850 | scpl38 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G05850 | scpl38 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.45455 x 10-1 | 0 | 1 | 4 | 1 | 0.00% | 20.00% | 1 | 5 | TAIR8 |
Avg. embryo expression (dissected): '5.73039' Avg. embryo expression (LCM): '0' |
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| AT2G05850 | scpl38 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.11392 x 10-1 | 4 | 0 | 16 | 12 | 100.00% | 42.86% | 4 | 28 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.051743' Avg. expression score for this sample: '12.502' Avg. expression score in LCM sample: '5.58521' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G05850 | scpl38 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.29208 x 10-1 | 8 | 0 | 13 | 1 | 100.00% | 7.14% | 8 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.051743' Avg. expression score for this sample: '6.33197' Avg. expression score in LCM sample: '5.58521' Tissue used: 'full endosperm' |
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| AT2G05840 | PAA2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.4 x 10-6 | 223 | 46 | 106 | 313 | 82.90% | 74.70% | 269 | 419 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.00002' Avg. expression score for this sample: '479.631' Avg. expression score in LCM sample: '223.056' Tissue used: 'full endosperm' |
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| AT2G05840 | PAA2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.3223 x 10-1 | 43 | 56 | 9 | 9 | 43.43% | 50.00% | 99 | 18 | TAIR8 |
Avg. embryo expression (dissected): '562.404' Avg. embryo expression (LCM): '361.901' |
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| AT2G05840 | PAA2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.96744 x 10-1 | 45 | 11 | 32 | 47 | 80.36% | 59.49% | 56 | 79 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.00002' Avg. expression score for this sample: '491.928' Avg. expression score in LCM sample: '223.056' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G05840 | PAA2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.8092 x 10-2 | 72 | 10 | 87.80% | 82 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G05840 | PAA2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.3 x 10-14 | 1002 | 118 | 89.46% | 1120 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G05840 | PAA2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.584 x 10-3 | 820 | 354 | 69.85% | 1174 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G05830 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.4666 x 10-2 | 20 | 3 | 86.96% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G05830 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.7595 x 10-2 | 1 | 5 | 16.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |