| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G50030 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G50030 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G50020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.00857 x 10-1 | 91 | 39 | 48 | 60 | 70.00% | 55.56% | 130 | 108 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.603173' Avg. expression score for this sample: '788.998' Avg. expression score in LCM sample: '413.688' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G50020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.28243 x 10-1 | 278 | 88 | 152 | 260 | 75.96% | 63.11% | 366 | 412 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.603173' Avg. expression score for this sample: '818.841' Avg. expression score in LCM sample: '413.688' Tissue used: 'full endosperm' |
|||||
| AT5G50020 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.84054 x 10-1 | 47 | 35 | 10 | 2 | 57.32% | 16.67% | 82 | 12 | TAIR8 |
Avg. embryo expression (dissected): '421.52' Avg. embryo expression (LCM): '325.255' |
||||
| AT5G50020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.44886 x 10-1 | 34 | 23 | 59.65% | 57 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G50020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.3271 x 10-2 | 87 | 24 | 78.38% | 111 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G50020 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.3 x 10-5 | 98 | 15 | 86.73% | 113 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G50012 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.598092' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT5G50012 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.206' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT5G50012 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '13.167' Avg. embryo expression (LCM): '25.2553' |
||||||
| AT5G50012 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G50012 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G50012 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G50011 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT5G50011 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT5G50011 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.40083' Avg. embryo expression (LCM): '0' |
||||||
| AT5G50011 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G50011 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G50011 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G50010 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.802729' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT5G50010 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.527698' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT5G50010 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '9.77021' Avg. embryo expression (LCM): '6.79419' |
||||||
| AT5G50010 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G50010 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G50010 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G50000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '27.1456' Avg. expression score in LCM sample: '15.6533' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT5G50000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 3 | 0 | 3 | 0.00% | 100.00% | 3 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '20.2143' Avg. expression score in LCM sample: '15.6533' Tissue used: 'full endosperm' |
|||||
| AT5G50000 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '83.1891' Avg. embryo expression (LCM): '96.0857' |
||||||
| AT5G50000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G50000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G50000 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G49990 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.99908 x 10-1 | 26 | 20 | 18 | 78 | 56.52% | 81.25% | 46 | 96 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.909777' Avg. expression score for this sample: '125.536' Avg. expression score in LCM sample: '26.7796' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G49990 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.48889 x 10-1 | 117 | 121 | 77 | 241 | 49.16% | 75.79% | 238 | 318 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.909777' Avg. expression score for this sample: '183.266' Avg. expression score in LCM sample: '26.7796' Tissue used: 'full endosperm' |
|||||
| AT5G49990 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 4 | 5 | 1 | 3 | 44.44% | 75.00% | 9 | 4 | TAIR8 |
Avg. embryo expression (dissected): '14.9854' Avg. embryo expression (LCM): '6.54302' |
||||
| AT5G49990 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.243 x 10-2 | 46 | 13 | 77.97% | 59 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G49990 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.677 x 10-3 | 20 | 1 | 95.24% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G49990 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.74286 x 10-1 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G49980 | AFB5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.28953 x 10-1 | 87 | 27 | 35 | 46 | 76.32% | 56.79% | 114 | 81 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.123822' Avg. expression score for this sample: '215.504' Avg. expression score in LCM sample: '163.985' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G49980 | AFB5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.10454 x 10-1 | 175 | 51 | 114 | 233 | 77.43% | 67.15% | 226 | 347 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.123822' Avg. expression score for this sample: '196.644' Avg. expression score in LCM sample: '163.985' Tissue used: 'full endosperm' |
||||
| AT5G49980 | AFB5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.62631 x 10-1 | 122 | 76 | 24 | 10 | 61.62% | 29.41% | 198 | 34 | TAIR8 |
Avg. embryo expression (dissected): '377.876' Avg. embryo expression (LCM): '309.468' |
|||
| AT5G49980 | AFB5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.65076 x 10-1 | 43 | 11 | 79.63% | 54 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G49980 | AFB5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.59934 x 10-1 | 132 | 60 | 68.75% | 192 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G49980 | AFB5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.5 x 10-16 | 232 | 15 | 93.93% | 247 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G49970 | PPOX | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '25.7361' Avg. expression score in LCM sample: '15.0066' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G49970 | PPOX | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 1 | 0 | 2 | 0.00% | 100.00% | 1 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '43.7214' Avg. expression score in LCM sample: '15.0066' Tissue used: 'full endosperm' |
||||
| AT5G49970 | PPOX | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '34.0971' Avg. embryo expression (LCM): '28.3447' |
|||||
| AT5G49970 | PPOX | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G49970 | PPOX | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G49970 | PPOX | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G49960 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.552737' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT5G49960 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 6 | 0 | 4 | 1 | 100.00% | 20.00% | 6 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.44465' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT5G49960 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Avg. embryo expression (dissected): '2.79984' Avg. embryo expression (LCM): '4.9104' |
|||||
| AT5G49960 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G49960 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G49960 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G49950 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.76066 x 10-1 | 6 | 8 | 3 | 9 | 42.86% | 75.00% | 14 | 12 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.086934' Avg. expression score for this sample: '13.6178' Avg. expression score in LCM sample: '5.70279' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G49950 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.152 x 10-3 | 23 | 3 | 4 | 27 | 88.46% | 87.10% | 26 | 31 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.086934' Avg. expression score for this sample: '17.0593' Avg. expression score in LCM sample: '5.70279' Tissue used: 'full endosperm' |
|||||
| AT5G49950 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.22393 x 10-1 | 4 | 8 | 2 | 2 | 33.33% | 50.00% | 12 | 4 | TAIR8 |
Avg. embryo expression (dissected): '13.5169' Avg. embryo expression (LCM): '22.9948' |
||||
| AT5G49950 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.78716 x 10-1 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G49950 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 19 | 5 | 79.17% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G49950 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.518 x 10-3 | 57 | 2 | 96.61% | 59 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G49945 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 33 | 10 | 21 | 31 | 76.74% | 59.62% | 43 | 52 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.404227' Avg. expression score for this sample: '227.723' Avg. expression score in LCM sample: '51.6191' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G49945 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.21639 x 10-1 | 68 | 35 | 50 | 68 | 66.02% | 57.63% | 103 | 118 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.404227' Avg. expression score for this sample: '194.031' Avg. expression score in LCM sample: '51.6191' Tissue used: 'full endosperm' |
|||||
| AT5G49945 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.30801 x 10-1 | 21 | 7 | 14 | 9 | 75.00% | 39.13% | 28 | 23 | TAIR8 |
Avg. embryo expression (dissected): '164.252' Avg. embryo expression (LCM): '115.338' |
||||
| AT5G49945 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.2276 x 10-2 | 11 | 1 | 91.67% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G49945 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.9 x 10-6 | 41 | 2 | 95.35% | 43 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G49945 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.6 x 10-12 | 116 | 7 | 94.31% | 123 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G49940 | NFU2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.8336 x 10-2 | 320 | 81 | 116 | 191 | 79.80% | 62.21% | 401 | 307 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000172' Avg. expression score for this sample: '916.443' Avg. expression score in LCM sample: '341.697' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G49940 | NFU2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.331 x 10-3 | 168 | 30 | 63 | 144 | 84.85% | 69.57% | 198 | 207 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000172' Avg. expression score for this sample: '623.251' Avg. expression score in LCM sample: '341.697' Tissue used: 'full endosperm' |
||||
| AT5G49940 | NFU2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.29953 x 10-1 | 187 | 104 | 67 | 28 | 64.26% | 29.47% | 291 | 95 | TAIR8 |
Avg. embryo expression (dissected): '767.22' Avg. embryo expression (LCM): '442.615' |
|||
| AT5G49940 | NFU2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.09637 x 10-1 | 65 | 25 | 72.22% | 90 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G49940 | NFU2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.9663 x 10-1 | 101 | 29 | 77.69% | 130 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G49940 | NFU2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.1793 x 10-2 | 189 | 42 | 81.82% | 231 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G49930 | emb1441 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 142 | 51 | 70 | 102 | 73.58% | 59.30% | 193 | 172 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '6.2e-07' Avg. expression score for this sample: '152.43' Avg. expression score in LCM sample: '87.0704' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G49930 | emb1441 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.0 x 10-9 | 268 | 82 | 114 | 470 | 76.57% | 80.48% | 350 | 584 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '6.2e-07' Avg. expression score for this sample: '220.041' Avg. expression score in LCM sample: '87.0704' Tissue used: 'full endosperm' |
||||
| AT5G49930 | emb1441 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.19553 x 10-1 | 114 | 84 | 18 | 23 | 57.58% | 56.10% | 198 | 41 | TAIR8 |
Avg. embryo expression (dissected): '137.482' Avg. embryo expression (LCM): '110.704' |
|||
| AT5G49930 | emb1441 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 9.482 x 10-3 | 66 | 38 | 63.46% | 104 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G49930 | emb1441 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.74578 x 10-1 | 391 | 133 | 74.62% | 524 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G49930 | emb1441 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.4 x 10-16 | 627 | 67 | 90.35% | 694 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G49920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.33381 x 10-1 | 52 | 16 | 23 | 46 | 76.47% | 66.67% | 68 | 69 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.946944' Avg. expression score for this sample: '156.185' Avg. expression score in LCM sample: '13.1546' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G49920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.35785 x 10-1 | 167 | 87 | 45 | 70 | 65.75% | 60.87% | 254 | 115 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.946944' Avg. expression score for this sample: '210.962' Avg. expression score in LCM sample: '13.1546' Tissue used: 'full endosperm' |
|||||
| AT5G49920 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.2152 x 10-2 | 152 | 100 | 14 | 24 | 60.32% | 63.16% | 252 | 38 | TAIR8 |
Avg. embryo expression (dissected): '439.126' Avg. embryo expression (LCM): '5.18669' |
||||
| AT5G49920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.254 x 10-3 | 18 | 0 | 100.00% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G49920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.47433 x 10-1 | 13 | 8 | 61.90% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G49920 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.2542 x 10-1 | 17 | 7 | 70.83% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G49910 | cpHsc70-2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.97973 x 10-1 | 213 | 125 | 86 | 239 | 63.02% | 73.54% | 338 | 325 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000046' Avg. expression score for this sample: '1359.03' Avg. expression score in LCM sample: '258.242' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G49910 | cpHsc70-2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 x 10-6 | 262 | 94 | 143 | 510 | 73.60% | 78.10% | 356 | 653 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000046' Avg. expression score for this sample: '1266.74' Avg. expression score in LCM sample: '258.242' Tissue used: 'full endosperm' |
||||
| AT5G49910 | cpHsc70-2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.11404 x 10-1 | 383 | 426 | 114 | 110 | 47.34% | 49.11% | 809 | 224 | TAIR8 |
Avg. embryo expression (dissected): '2716.56' Avg. embryo expression (LCM): '1911.5' |
|||
| AT5G49910 | cpHsc70-2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.3 x 10-7 | 164 | 20 | 89.13% | 184 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G49910 | cpHsc70-2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.86 x 10-4 | 299 | 67 | 81.69% | 366 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G49910 | cpHsc70-2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 x 10-14 | 484 | 63 | 88.48% | 547 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G49900 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.1 x 10-6 | 54 | 7 | 5 | 69 | 88.52% | 93.24% | 61 | 74 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '11.0243' Avg. expression score in LCM sample: '.440937' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G49900 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 161 | 0 | 4 | 225 | 100.00% | 98.25% | 161 | 229 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '23.7281' Avg. expression score in LCM sample: '.440937' Tissue used: 'full endosperm' |
|||||
| AT5G49900 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 4 | 4 | 0 | 2 | 50.00% | 100.00% | 8 | 2 | TAIR8 |
Avg. embryo expression (dissected): '1.74304' Avg. embryo expression (LCM): '.376757' |
||||
| AT5G49900 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.38863 x 10-1 | 65 | 0 | 100.00% | 65 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G49900 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.2661 x 10-2 | 192 | 1 | 99.48% | 193 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G49900 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.6 x 10-5 | 454 | 0 | 100.00% | 454 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G49890 | CLC-C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | MEG | 3.04346 x 10-1 | 61 | 24 | 5 | 18 | 71.76% | 78.26% | 85 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.2e-08' Avg. expression score for this sample: '27.3326' Avg. expression score in LCM sample: '19.754' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G49890 | CLC-C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | MEG | 8.4 x 10-11 | 103 | 0 | 21 | 109 | 100.00% | 83.85% | 103 | 130 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.2e-08' Avg. expression score for this sample: '51.3001' Avg. expression score in LCM sample: '19.754' Tissue used: 'full endosperm' |