| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT2G20290 | XIG | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.82833 x 10-1 | 154 | 76 | 66.96% | 230 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G20290 | XIG | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 3 | 1 | 4 | 40.00% | 80.00% | 5 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.471261' Avg. expression score for this sample: '70.5684' Avg. expression score in LCM sample: '165.072' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G20280 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.42036 x 10-1 | 423 | 168 | 171 | 287 | 71.57% | 62.66% | 591 | 458 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.135513' Avg. expression score for this sample: '1459.07' Avg. expression score in LCM sample: '170.364' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G20280 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.67 x 10-4 | 101 | 19 | 84.17% | 120 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G20280 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.3456 x 10-1 | 538 | 231 | 301 | 652 | 69.96% | 68.42% | 769 | 953 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.135513' Avg. expression score for this sample: '1097.77' Avg. expression score in LCM sample: '170.364' Tissue used: 'full endosperm' |
|||||
| AT2G20280 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1069 | 180 | 85.59% | 1249 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G20280 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.90724 x 10-1 | 357 | 322 | 99 | 102 | 52.58% | 50.75% | 679 | 201 | TAIR8 |
Avg. embryo expression (dissected): '1701.76' Avg. embryo expression (LCM): '631.445' |
||||
| AT2G20280 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.8 x 10-7 | 855 | 262 | 76.54% | 1117 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G20270 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.78121 x 10-1 | 20 | 5 | 80.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G20270 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.77713 x 10-1 | 4 | 7 | 2 | 1 | 36.36% | 33.33% | 11 | 3 | TAIR8 |
Avg. embryo expression (dissected): '38.0899' Avg. embryo expression (LCM): '77.5241' |
||||
| AT2G20270 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 1 | 3 | 100.00% | 75.00% | 1 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.657069' Avg. expression score for this sample: '15.678' Avg. expression score in LCM sample: '6.59936' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G20270 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.05695 x 10-1 | 16 | 2 | 88.89% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G20270 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.14687 x 10-1 | 6 | 6 | 6 | 25 | 50.00% | 80.65% | 12 | 31 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.657069' Avg. expression score for this sample: '26.7216' Avg. expression score in LCM sample: '6.59936' Tissue used: 'full endosperm' |
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| AT2G20270 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.6561 x 10-1 | 4 | 2 | 66.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G20260 | PSAE-2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.572 x 10-3 | 10 | 16 | 38.46% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G20260 | PSAE-2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.3954 x 10-1 | 102 | 33 | 41 | 80 | 75.56% | 66.12% | 135 | 121 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.274339' Avg. expression score for this sample: '201.264' Avg. expression score in LCM sample: '51.1047' Tissue used: 'full endosperm' |
||||
| AT2G20260 | PSAE-2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.0687 x 10-2 | 13 | 12 | 52.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G20260 | PSAE-2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.04655 x 10-1 | 98 | 51 | 26 | 5 | 65.77% | 16.13% | 149 | 31 | TAIR8 |
Avg. embryo expression (dissected): '385.029' Avg. embryo expression (LCM): '174.652' |
|||
| AT2G20260 | PSAE-2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.0 x 10-5 | 4 | 14 | 22.22% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G20260 | PSAE-2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.84333 x 10-1 | 62 | 19 | 19 | 25 | 76.54% | 56.82% | 81 | 44 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.274339' Avg. expression score for this sample: '172.491' Avg. expression score in LCM sample: '51.1047' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G20250 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 2 | 0 | 100.00% | 0.00% | 2 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '6.87465' Avg. expression score in LCM sample: '9.45076' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G20250 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.94584 x 10-1 | 10 | 7 | 58.82% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G20250 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 2 | 0 | 1 | 33.33% | 100.00% | 3 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '6.90086' Avg. expression score in LCM sample: '9.45076' Tissue used: 'full endosperm' |
|||||
| AT2G20250 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G20250 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.75362 x 10-1 | 12 | 7 | 63.16% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G20250 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 3 | 3 | 2 | 1 | 50.00% | 33.33% | 6 | 3 | TAIR8 |
Avg. embryo expression (dissected): '15.333' Avg. embryo expression (LCM): '19.0388' |
||||
| AT2G20240 | TRM17 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 1 | 1 | 1 | 66.67% | 50.00% | 3 | 2 | TAIR8 |
Avg. embryo expression (dissected): '23.5922' Avg. embryo expression (LCM): '21.4501' |
|||
| AT2G20240 | TRM17 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 1 | 1 | 100.00% | 50.00% | 1 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.637136' Avg. expression score for this sample: '14.3839' Avg. expression score in LCM sample: '10.7589' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G20240 | TRM17 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.431 x 10-3 | 14 | 0 | 100.00% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G20240 | TRM17 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.65895 x 10-1 | 6 | 8 | 42.86% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G20240 | TRM17 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.23798 x 10-1 | 10 | 9 | 6 | 10 | 52.63% | 62.50% | 19 | 16 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.637136' Avg. expression score for this sample: '27.25' Avg. expression score in LCM sample: '10.7589' Tissue used: 'full endosperm' |
||||
| AT2G20240 | TRM17 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.27154 x 10-1 | 8 | 1 | 88.89% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G20230 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G20230 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '57.3131' Avg. expression score in LCM sample: '35.0986' Tissue used: 'full endosperm' |
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| AT2G20230 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G20230 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G20230 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '52.9554' Avg. embryo expression (LCM): '38.1655' |
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| AT2G20230 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '53.4518' Avg. expression score in LCM sample: '35.0986' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G20210 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '4.91284' Avg. expression score in LCM sample: '5.01199' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G20210 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G20210 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '10.327' Avg. embryo expression (LCM): '3.6671' |
||||||
| AT2G20210 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G20210 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.58198' Avg. expression score in LCM sample: '5.01199' Tissue used: 'full endosperm' |
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| AT2G20210 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G20208 | LCR60 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.8732 x 10-2 | 367 | 213 | 63.28% | 580 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G20208 | LCR60 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.42857 x 10-1 | 0 | 0 | 4 | 0 | 0.00% | 0 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.142857' Avg. expression score for this sample: '2.28971' Avg. expression score in LCM sample: '3.26294' Tissue used: 'full endosperm' |
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| AT2G20208 | LCR60 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G20208 | LCR60 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.82051 x 10-1 | 0 | 2 | 5 | 1 | 0.00% | 16.67% | 2 | 6 | TAIR8 |
Avg. embryo expression (dissected): '13.1516' Avg. embryo expression (LCM): '0' |
|||
| AT2G20208 | LCR60 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.142857' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '3.26294' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G20208 | LCR60 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.6975 x 10-2 | 293 | 163 | 64.25% | 456 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G20190 | CLASP | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.93 x 10-4 | 59 | 6 | 90.77% | 65 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G20190 | CLASP | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 35 | 40 | 7 | 14 | 46.67% | 66.67% | 75 | 21 | TAIR8 |
Avg. embryo expression (dissected): '202.69' Avg. embryo expression (LCM): '160.072' |
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| AT2G20190 | CLASP | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 21 | 12 | 15 | 37 | 63.64% | 71.15% | 33 | 52 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.502625' Avg. expression score for this sample: '175.404' Avg. expression score in LCM sample: '180.873' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G20190 | CLASP | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.9267 x 10-2 | 21 | 2 | 91.30% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G20190 | CLASP | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.54205 x 10-1 | 47 | 21 | 28 | 70 | 69.12% | 71.43% | 68 | 98 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.502625' Avg. expression score for this sample: '218.018' Avg. expression score in LCM sample: '180.873' Tissue used: 'full endosperm' |
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| AT2G20190 | CLASP | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.6 x 10-5 | 64 | 5 | 92.75% | 69 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G20180 | PIL5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.64286 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G20180 | PIL5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 0 | 0 | 1 | 100.00% | 100.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.83899' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||
| AT2G20180 | PIL5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G20180 | PIL5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.4 | 0 | 2 | 1 | 0 | 0.00% | 0.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.01951' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G20180 | PIL5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G20180 | PIL5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 3 | 2 | 4 | 40.00% | 66.67% | 5 | 6 | TAIR8 |
Avg. embryo expression (dissected): '98.6988' Avg. embryo expression (LCM): '48.024' |
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| AT2G20170 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.1994' Avg. embryo expression (LCM): '0' |
||||||
| AT2G20170 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.2381 x 10-1 | 1 | 1 | 3 | 0 | 50.00% | 0.00% | 2 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.025328' Avg. expression score for this sample: '48.8732' Avg. expression score in LCM sample: '155.886' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G20170 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 92 | 379 | 19.53% | 471 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G20170 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G20170 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.9779 x 10-2 | 2 | 0 | 8 | 0 | 100.00% | 0.00% | 2 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.025328' Avg. expression score for this sample: '34.9172' Avg. expression score in LCM sample: '155.886' Tissue used: 'full endosperm' |
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| AT2G20170 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.8 x 10-5 | 21 | 3 | 87.50% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G20160 | MEO | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.40855 x 10-1 | 104 | 72 | 59.09% | 176 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G20160 | MEO | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 1 | 1 | 1 | 66.67% | 50.00% | 3 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.05103' Avg. expression score in LCM sample: '78.0459' Tissue used: 'full endosperm' |
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| AT2G20160 | MEO | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G20160 | MEO | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.4379 x 10-1 | 442 | 309 | 58.85% | 751 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G20160 | MEO | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.28461' Avg. embryo expression (LCM): '0' |
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| AT2G20160 | MEO | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 3 | 0 | 1 | 0 | 100.00% | 0.00% | 3 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '10.3017' Avg. expression score in LCM sample: '78.0459' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G20150 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G20150 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 1 | 85.71% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G20150 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Avg. embryo expression (dissected): '2.64924' Avg. embryo expression (LCM): '0' |
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| AT2G20150 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G20150 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.28774' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT2G20150 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G20142 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G20142 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 2 | 100.00% | 100.00% | 1 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '11.4065' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT2G20142 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G20142 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.56987' Avg. embryo expression (LCM): '0' |
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| AT2G20142 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '4.02676' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G20142 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G20140 | RPT2b | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G20140 | RPT2b | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '187.748' Avg. embryo expression (LCM): '202.155' |
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| AT2G20140 | RPT2b | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '94.7611' Avg. expression score in LCM sample: '108.706' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G20140 | RPT2b | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G20140 | RPT2b | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '181.627' Avg. expression score in LCM sample: '108.706' Tissue used: 'full endosperm' |
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| AT2G20140 | RPT2b | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G20130 | LCV1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.66723 x 10-1 | 28 | 5 | 84.85% | 33 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G20130 | LCV1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.27865 x 10-1 | 8 | 4 | 4 | 19 | 66.67% | 82.61% | 12 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.63191' Avg. expression score for this sample: '104.912' Avg. expression score in LCM sample: '84.7923' Tissue used: 'full endosperm' |
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| AT2G20130 | LCV1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G20130 | LCV1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 2 | 1 | 2 | 33.33% | 66.67% | 3 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.63191' Avg. expression score for this sample: '118.081' Avg. expression score in LCM sample: '84.7923' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G20130 | LCV1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.25806 x 10-1 | 32 | 7 | 82.05% | 39 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G20130 | LCV1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '105.782' Avg. embryo expression (LCM): '77.6999' |
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| AT2G20120 | COV1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '348.294' Avg. embryo expression (LCM): '386.754' |
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| AT2G20120 | COV1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '345.26' Avg. expression score in LCM sample: '255.229' Tissue used: 'pure endosperm, no chalazal' |