| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT2G27470 | NF-YB11 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.91515 x 10-1 | 7180 | 3765 | 4350 | 8641 | 65.60% | 66.52% | 10945 | 12991 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '9.6e-09' Avg. expression score for this sample: '8618.07' Avg. expression score in LCM sample: '385.203' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27470 | NF-YB11 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.8 x 10-25 | 6254 | 2476 | 2829 | 7120 | 71.64% | 71.56% | 8730 | 9949 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '9.6e-09' Avg. expression score for this sample: '4561.61' Avg. expression score in LCM sample: '385.203' Tissue used: 'full endosperm' |
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| AT2G27460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.2875 x 10-2 | 31 | 3 | 13 | 37 | 91.18% | 74.00% | 34 | 50 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.032478' Avg. expression score for this sample: '163.795' Avg. expression score in LCM sample: '110.661' Tissue used: 'full endosperm' |
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| AT2G27460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.37494 x 10-1 | 11 | 7 | 61.11% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27460 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 16 | 18 | 5 | 5 | 47.06% | 50.00% | 34 | 10 | TAIR8 |
Avg. embryo expression (dissected): '147.718' Avg. embryo expression (LCM): '138.433' |
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| AT2G27460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.29223 x 10-1 | 13 | 5 | 9 | 28 | 72.22% | 75.68% | 18 | 37 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.032478' Avg. expression score for this sample: '140.371' Avg. expression score in LCM sample: '110.661' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27460 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 44 | 11 | 80.00% | 55 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 99 | 28 | 77.95% | 127 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27450 | NLP1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.0 x 10-5 | 255 | 41 | 86.15% | 296 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27450 | NLP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.7 x 10-21 | 493 | 32 | 93.90% | 525 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27450 | NLP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.5425 x 10-2 | 129 | 63 | 46 | 167 | 67.19% | 78.40% | 192 | 213 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000025' Avg. expression score for this sample: '95.3441' Avg. expression score in LCM sample: '51.134' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G27450 | NLP1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.87824 x 10-1 | 37 | 9 | 80.43% | 46 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27450 | NLP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.44 x 10-4 | 187 | 62 | 66 | 244 | 75.10% | 78.71% | 249 | 310 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000025' Avg. expression score for this sample: '98.9009' Avg. expression score in LCM sample: '51.134' Tissue used: 'full endosperm' |
||||
| AT2G27450 | NLP1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.21814 x 10-1 | 110 | 127 | 28 | 31 | 46.41% | 52.54% | 237 | 59 | TAIR8 |
Avg. embryo expression (dissected): '101.967' Avg. embryo expression (LCM): '99.577' |
|||
| AT2G27430 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.72305' Avg. embryo expression (LCM): '0' |
||||||
| AT2G27430 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27430 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.177696' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27430 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.241204' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT2G27430 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27430 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27420 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27420 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27420 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.42857 x 10-1 | 0 | 1 | 3 | 0 | 0.00% | 0.00% | 1 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.142857' Avg. expression score for this sample: '3.28126' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT2G27420 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27420 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.23596' Avg. embryo expression (LCM): '.96701' |
||||||
| AT2G27420 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.142857' Avg. expression score for this sample: '.395501' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27410 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.27631' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT2G27410 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27410 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.194966' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT2G27410 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT2G27410 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27410 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.1 | 0 | 3 | 0.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27402 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27402 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.2632 x 10-2 | 15 | 0 | 100.00% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27402 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.693717' Avg. embryo expression (LCM): '1.49447' |
|||||
| AT2G27402 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27402 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 2 | 0 | 0.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.54152' Avg. expression score in LCM sample: '1.74905' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27402 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 3 | 0 | 0 | 0 | 100.00% | 3 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.3613' Avg. expression score in LCM sample: '1.74905' Tissue used: 'full endosperm' |
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| AT2G27400 | TAS1A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.76466 x 10-1 | 21 | 9 | 6 | 18 | 70.00% | 75.00% | 30 | 24 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.4929' Avg. expression score for this sample: '18.0133' Avg. expression score in LCM sample: '15.815' Tissue used: 'full endosperm' |
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| AT2G27400 | TAS1A | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.07181 x 10-1 | 14 | 1 | 93.33% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27400 | TAS1A | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.4604 x 10-1 | 52 | 29 | 8 | 7 | 64.20% | 46.67% | 81 | 15 | TAIR8 |
Avg. embryo expression (dissected): '65.4275' Avg. embryo expression (LCM): '117.611' |
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| AT2G27400 | TAS1A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.64484 x 10-1 | 10 | 6 | 1 | 9 | 62.50% | 90.00% | 16 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.4929' Avg. expression score for this sample: '15.0015' Avg. expression score in LCM sample: '15.815' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27400 | TAS1A | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.56 x 10-4 | 6 | 14 | 30.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27400 | TAS1A | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.91804 x 10-1 | 6 | 5 | 54.55% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.7 x 10-8 | 1092 | 51 | 95.54% | 1143 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27390 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.4 x 10-9 | 5963 | 19 | 99.68% | 5982 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 764 | 20 | 6 | 541 | 97.45% | 98.90% | 784 | 547 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '789.64' Avg. expression score in LCM sample: '3.64508' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.0146 x 10-1 | 101 | 0 | 100.00% | 101 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 998 | 13 | 4 | 607 | 98.71% | 99.35% | 1011 | 611 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '672.901' Avg. expression score in LCM sample: '3.64508' Tissue used: 'full endosperm' |
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| AT2G27390 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.0 x 10-16 | 87 | 8 | 0 | 34 | 91.58% | 100.00% | 95 | 34 | TAIR8 |
Avg. embryo expression (dissected): '106.688' Avg. embryo expression (LCM): '0' |
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| AT2G27385 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '387.476' Avg. embryo expression (LCM): '260.427' |
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| AT2G27385 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27385 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '34.7824' Avg. expression score in LCM sample: '4.01253' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27385 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '59.0766' Avg. expression score in LCM sample: '4.01253' Tissue used: 'full endosperm' |
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| AT2G27385 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27385 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27380 | EPR1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.3359 x 10-2 | 202 | 75 | 72.92% | 277 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27380 | EPR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.3134 x 10-2 | 1336 | 775 | 63.29% | 2111 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27380 | EPR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 619864 | 325181 | 240340 | 454271 | 65.59% | 65.40% | 945045 | 694611 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '390311' Avg. expression score in LCM sample: '8900.44' Tissue used: 'full endosperm' |
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| AT2G27380 | EPR1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.59124 x 10-1 | 130400 | 67480 | 65.90% | 197880 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27380 | EPR1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 0.0 | 1901 | 1085 | 2176 | 4920 | 63.66% | 69.33% | 2986 | 7096 | TAIR8 |
Avg. embryo expression (dissected): '10553.9' Avg. embryo expression (LCM): '13.1865' |
|||
| AT2G27380 | EPR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.4207 x 10-2 | 144235 | 88514 | 112142 | 259958 | 61.97% | 69.86% | 232749 | 372100 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '282733' Avg. expression score in LCM sample: '8900.44' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27370 | CASP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.277133' Avg. expression score in LCM sample: '3.13066' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27370 | CASP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27370 | CASP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.14018' Avg. expression score in LCM sample: '3.13066' Tissue used: 'full endosperm' |
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| AT2G27370 | CASP3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
|||||
| AT2G27370 | CASP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27370 | CASP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27360 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27360 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.59 x 10-4 | 25 | 1 | 96.15% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27360 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.227 x 10-2 | 101 | 35 | 29 | 6 | 74.26% | 17.14% | 136 | 35 | TAIR8 |
Avg. embryo expression (dissected): '54.3835' Avg. embryo expression (LCM): '33.7951' |
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| AT2G27360 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 2 | 60.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27360 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 7 | 0 | 3 | 1 | 100.00% | 25.00% | 7 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.738548' Avg. expression score for this sample: '2.06322' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27360 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.21127 x 10-1 | 32 | 4 | 22 | 10 | 88.89% | 31.25% | 36 | 32 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.738548' Avg. expression score for this sample: '12.0388' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT2G27350 | OTLD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.53 x 10-4 | 111 | 26 | 36 | 123 | 81.02% | 77.36% | 137 | 159 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.009894' Avg. expression score for this sample: '135.812' Avg. expression score in LCM sample: '97.2708' Tissue used: 'full endosperm' |
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| AT2G27350 | OTLD1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.2632 x 10-2 | 36 | 4 | 90.00% | 40 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27350 | OTLD1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.69121 x 10-1 | 57 | 38 | 15 | 12 | 60.00% | 44.44% | 95 | 27 | TAIR8 |
Avg. embryo expression (dissected): '170.455' Avg. embryo expression (LCM): '89.0403' |
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| AT2G27350 | OTLD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.20098 x 10-1 | 86 | 33 | 40 | 66 | 72.27% | 62.26% | 119 | 106 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.009894' Avg. expression score for this sample: '187.199' Avg. expression score in LCM sample: '97.2708' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27350 | OTLD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.7 x 10-7 | 251 | 31 | 89.01% | 282 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27350 | OTLD1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.2466 x 10-2 | 159 | 34 | 82.38% | 193 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27340 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27340 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 2 | 71.43% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27340 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 1 | 1 | 100.00% | 50.00% | 1 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.677617' Avg. expression score for this sample: '4.47046' Avg. expression score in LCM sample: '4.07132' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27340 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27340 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.35117 x 10-1 | 5 | 0 | 2 | 4 | 100.00% | 66.67% | 5 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.677617' Avg. expression score for this sample: '11.3478' Avg. expression score in LCM sample: '4.07132' Tissue used: 'full endosperm' |
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| AT2G27340 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.2381 x 10-1 | 4 | 1 | 0 | 0 | 80.00% | 5 | 0 | TAIR8 |
Avg. embryo expression (dissected): '6.59876' Avg. embryo expression (LCM): '2.61218' |
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| AT2G27330 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.22836 x 10-1 | 196 | 139 | 42 | 31 | 58.51% | 42.47% | 335 | 73 | TAIR8 |
Avg. embryo expression (dissected): '348.862' Avg. embryo expression (LCM): '372.299' |
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| AT2G27330 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.98147 x 10-1 | 18 | 11 | 62.07% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27330 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.49843 x 10-1 | 235 | 60 | 128 | 147 | 79.66% | 53.45% | 295 | 275 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.528111' Avg. expression score for this sample: '363.296' Avg. expression score in LCM sample: '96.3742' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27330 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.52239 x 10-1 | 100 | 36 | 105 | 134 | 73.53% | 56.07% | 136 | 239 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.528111' Avg. expression score for this sample: '313.642' Avg. expression score in LCM sample: '96.3742' Tissue used: 'full endosperm' |
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| AT2G27330 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.348 x 10-3 | 83 | 20 | 80.58% | 103 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27330 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.8028 x 10-2 | 39 | 37 | 51.32% | 76 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27320 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27320 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27320 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT2G27320 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27320 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT2G27320 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27315 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27315 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |