| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT2G27990 | BLH8 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.34736 x 10-1 | 6 | 14 | 9 | 16 | 30.00% | 64.00% | 20 | 25 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.927547' Avg. expression score for this sample: '54.8206' Avg. expression score in LCM sample: '19.9892' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27990 | BLH8 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.09 x 10-4 | 26 | 1 | 96.30% | 27 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27980 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.438 x 10-3 | 141 | 26 | 84.43% | 167 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27980 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.48097 x 10-1 | 178 | 45 | 70 | 111 | 79.82% | 61.33% | 223 | 181 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000017' Avg. expression score for this sample: '424.117' Avg. expression score in LCM sample: '145.392' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G27980 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.7 x 10-5 | 304 | 58 | 117 | 272 | 83.98% | 69.92% | 362 | 389 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000017' Avg. expression score for this sample: '660.386' Avg. expression score in LCM sample: '145.392' Tissue used: 'full endosperm' |
|||||
| AT2G27980 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 581 | 22 | 96.35% | 603 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27980 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.39264 x 10-1 | 39 | 11 | 78.00% | 50 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27980 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.50724 x 10-1 | 212 | 141 | 71 | 46 | 60.06% | 39.32% | 353 | 117 | TAIR8 |
Avg. embryo expression (dissected): '666.836' Avg. embryo expression (LCM): '377.825' |
||||
| AT2G27970 | CKS2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.08161 x 10-1 | 4 | 13 | 2 | 2 | 23.53% | 50.00% | 17 | 4 | TAIR8 |
Avg. embryo expression (dissected): '189.664' Avg. embryo expression (LCM): '203.06' |
|||
| AT2G27970 | CKS2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.99169 x 10-1 | 8 | 9 | 47.06% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27970 | CKS2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 8 | 1 | 4 | 3 | 88.89% | 42.86% | 9 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.690447' Avg. expression score for this sample: '109.817' Avg. expression score in LCM sample: '162.735' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G27970 | CKS2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.39775 x 10-1 | 10 | 0 | 16 | 13 | 100.00% | 44.83% | 10 | 29 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.690447' Avg. expression score for this sample: '52.9295' Avg. expression score in LCM sample: '162.735' Tissue used: 'full endosperm' |
||||
| AT2G27970 | CKS2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.26316 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27970 | CKS2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.14669 x 10-1 | 9 | 3 | 75.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27960 | CKS1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.8479 x 10-2 | 22 | 2 | 91.67% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27960 | CKS1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.51285 x 10-1 | 16 | 9 | 64.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27960 | CKS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.89225 x 10-1 | 41 | 19 | 25 | 28 | 68.33% | 52.83% | 60 | 53 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.625325' Avg. expression score for this sample: '95.7446' Avg. expression score in LCM sample: '75.6355' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G27960 | CKS1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.36003 x 10-1 | 18 | 27 | 4 | 4 | 40.00% | 50.00% | 45 | 8 | TAIR8 |
Avg. embryo expression (dissected): '69.7943' Avg. embryo expression (LCM): '122.785' |
|||
| AT2G27960 | CKS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.51927 x 10-1 | 31 | 9 | 77.50% | 40 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27960 | CKS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.6318 x 10-2 | 35 | 8 | 22 | 63 | 81.40% | 74.12% | 43 | 85 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.625325' Avg. expression score for this sample: '72.5801' Avg. expression score in LCM sample: '75.6355' Tissue used: 'full endosperm' |
||||
| AT2G27950 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 3 | 0 | 0 | 0 | 100.00% | 3 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '205.435' Avg. expression score in LCM sample: '65.8614' Tissue used: 'full endosperm' |
||||||
| AT2G27950 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '190.469' Avg. embryo expression (LCM): '101.825' |
|||||
| AT2G27950 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.2 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27950 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '134.806' Avg. expression score in LCM sample: '65.8614' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT2G27950 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 0 | 100.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27950 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27940 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.63975 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27940 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27940 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.33664 x 10-1 | 5 | 4 | 55.56% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27940 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.6715 x 10-1 | 15 | 5 | 6 | 25 | 75.00% | 80.65% | 20 | 31 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.571475' Avg. expression score for this sample: '23.8535' Avg. expression score in LCM sample: '1.71966' Tissue used: 'full endosperm' |
|||||
| AT2G27940 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.9412 x 10-2 | 0 | 8 | 1 | 0 | 0.00% | 0.00% | 8 | 1 | TAIR8 |
Avg. embryo expression (dissected): '31.0957' Avg. embryo expression (LCM): '0' |
||||
| AT2G27940 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.15987 x 10-1 | 2 | 4 | 3 | 7 | 33.33% | 70.00% | 6 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.571475' Avg. expression score for this sample: '30.8117' Avg. expression score in LCM sample: '1.71966' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27930 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '9.58772' Avg. expression score in LCM sample: '7.26077' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT2G27930 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.46685' Avg. expression score in LCM sample: '7.26077' Tissue used: 'full endosperm' |
||||||
| AT2G27930 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27930 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27930 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.15053' Avg. embryo expression (LCM): '0' |
||||||
| AT2G27930 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 3 | 40.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27920 | SCPL51 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27920 | SCPL51 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.11315' Avg. embryo expression (LCM): '1.46935' |
|||||
| AT2G27920 | SCPL51 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27920 | SCPL51 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '4.81191' Avg. expression score in LCM sample: '.852479' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27920 | SCPL51 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '19.0219' Avg. expression score in LCM sample: '.852479' Tissue used: 'full endosperm' |
||||||
| AT2G27920 | SCPL51 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27900 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27900 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '41.2756' Avg. expression score in LCM sample: '40.3311' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27900 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '51.2092' Avg. embryo expression (LCM): '43.6411' |
|||||
| AT2G27900 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 5 | 50.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27900 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 5 | 1 | 4 | 2 | 83.33% | 33.33% | 6 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '88.6567' Avg. expression score in LCM sample: '40.3311' Tissue used: 'full endosperm' |
|||||
| AT2G27900 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.00032 x 10-1 | 5 | 1 | 83.33% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27880 | AGO5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.18 x 10-4 | 63 | 0 | 100.00% | 63 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27880 | AGO5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.4 x 10-9 | 37 | 2 | 4 | 82 | 94.87% | 95.35% | 39 | 86 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.4e-06' Avg. expression score for this sample: '42.3433' Avg. expression score in LCM sample: '33.5259' Tissue used: 'full endosperm' |
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| AT2G27880 | AGO5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.14286 x 10-1 | 4 | 0 | 0 | 0 | 100.00% | 4 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.9673' Avg. embryo expression (LCM): '2.788' |
||||
| AT2G27880 | AGO5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.0059 x 10-2 | 33 | 0 | 100.00% | 33 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27880 | AGO5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.32242 x 10-1 | 26 | 17 | 10 | 53 | 60.47% | 84.13% | 43 | 63 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.4e-06' Avg. expression score for this sample: '28.6904' Avg. expression score in LCM sample: '33.5259' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G27880 | AGO5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.4 x 10-6 | 136 | 1 | 99.27% | 137 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27860 | AXS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 642 | 52 | 92.51% | 694 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27860 | AXS1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.2 x 10-6 | 178 | 27 | 86.83% | 205 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27860 | AXS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.8 x 10-7 | 412 | 160 | 112 | 472 | 72.03% | 80.82% | 572 | 584 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000019' Avg. expression score for this sample: '1098.37' Avg. expression score in LCM sample: '644.739' Tissue used: 'full endosperm' |
||||
| AT2G27860 | AXS1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.45343 x 10-1 | 162 | 188 | 52 | 71 | 46.29% | 57.72% | 350 | 123 | TAIR8 |
Avg. embryo expression (dissected): '1321.77' Avg. embryo expression (LCM): '772.076' |
|||
| AT2G27860 | AXS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.40083 x 10-1 | 318 | 126 | 152 | 277 | 71.62% | 64.57% | 444 | 429 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000019' Avg. expression score for this sample: '1210.49' Avg. expression score in LCM sample: '644.739' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G27860 | AXS1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.8 x 10-22 | 535 | 54 | 90.83% | 589 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27850 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27850 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT2G27850 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT2G27850 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27850 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27850 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT2G27840 | HDT4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.19 x 10-4 | 70 | 174 | 8 | 27 | 28.69% | 77.14% | 244 | 35 | TAIR8 |
Avg. embryo expression (dissected): '102.144' Avg. embryo expression (LCM): '400.38' |
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| AT2G27840 | HDT4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.48483 x 10-1 | 80 | 39 | 67.23% | 119 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27840 | HDT4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 20 | 22 | 4 | 29 | 47.62% | 87.88% | 42 | 33 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.12648' Avg. expression score for this sample: '23.0863' Avg. expression score in LCM sample: '23.6049' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27840 | HDT4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.4827 x 10-2 | 22 | 8 | 18 | 76 | 73.33% | 80.85% | 30 | 94 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.12648' Avg. expression score for this sample: '32.5279' Avg. expression score in LCM sample: '23.6049' Tissue used: 'full endosperm' |
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| AT2G27840 | HDT4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.2597 x 10-1 | 24 | 7 | 77.42% | 31 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27840 | HDT4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.27 x 10-4 | 62 | 5 | 92.54% | 67 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27830 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27830 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27830 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.203989' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27830 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.51609' Avg. embryo expression (LCM): '0' |
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| AT2G27830 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27830 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.664792' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT2G27820 | PD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 1 | 1 | 0 | 50.00% | 0.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '25.9227' Avg. expression score in LCM sample: '13.5368' Tissue used: 'full endosperm' |
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| AT2G27820 | PD1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 0 | 1 | 0 | 100.00% | 0.00% | 1 | 1 | TAIR8 |
Avg. embryo expression (dissected): '52.0018' Avg. embryo expression (LCM): '56.1871' |
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| AT2G27820 | PD1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27820 | PD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '32.294' Avg. expression score in LCM sample: '13.5368' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27820 | PD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27820 | PD1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27810 | NAT12 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.19195 x 10-1 | 12 | 2 | 85.71% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27810 | NAT12 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.403 x 10-3 | 25 | 0 | 100.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27810 | NAT12 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 2 | 71.43% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G27810 | NAT12 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.09106 x 10-1 | 22 | 7 | 17 | 40 | 75.86% | 70.18% | 29 | 57 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.170141' Avg. expression score for this sample: '221.966' Avg. expression score in LCM sample: '127.74' Tissue used: 'full endosperm' |
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| AT2G27810 | NAT12 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.46895 x 10-1 | 27 | 9 | 7 | 4 | 75.00% | 36.36% | 36 | 11 | TAIR8 |
Avg. embryo expression (dissected): '297.181' Avg. embryo expression (LCM): '186.909' |
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| AT2G27810 | NAT12 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.16124 x 10-1 | 21 | 4 | 4 | 14 | 84.00% | 77.78% | 25 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.170141' Avg. expression score for this sample: '214.89' Avg. expression score in LCM sample: '127.74' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27800 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '32.3912' Avg. expression score in LCM sample: '10.9793' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G27800 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 3 | 0 | 1 | 0 | 100.00% | 0.00% | 3 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '52.0493' Avg. expression score in LCM sample: '10.9793' Tissue used: 'full endosperm' |
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| AT2G27800 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G27800 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27800 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '48.0592' Avg. embryo expression (LCM): '57.2546' |
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| AT2G27800 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27790 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G27790 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '5.73661' Avg. embryo expression (LCM): '5.31228' |