| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT2G31620 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.379009' Avg. embryo expression (LCM): '1.64517' |
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| AT2G31620 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G31610 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.30524 x 10-1 | 38 | 9 | 80.85% | 47 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31610 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.83389 x 10-1 | 6 | 3 | 66.67% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31610 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.48718 x 10-1 | 17 | 1 | 9 | 19 | 94.44% | 67.86% | 18 | 28 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.393294' Avg. expression score for this sample: '3673.06' Avg. expression score in LCM sample: '1679.96' Tissue used: 'full endosperm' |
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| AT2G31610 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.46965 x 10-1 | 8 | 4 | 0 | 0 | 66.67% | 12 | 0 | TAIR8 |
Avg. embryo expression (dissected): '13062.2' Avg. embryo expression (LCM): '9783.87' |
|||||
| AT2G31610 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 3 | 1 | 2 | 1 | 75.00% | 33.33% | 4 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.393294' Avg. expression score for this sample: '4977.68' Avg. expression score in LCM sample: '1679.96' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G31610 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.33471 x 10-1 | 42 | 8 | 84.00% | 50 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31600 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.95426 x 10-1 | 14 | 5 | 73.68% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.02126 x 10-1 | 8 | 2 | 2 | 15 | 80.00% | 88.24% | 10 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.006384' Avg. expression score for this sample: '128.368' Avg. expression score in LCM sample: '37.1269' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G31600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.38859 x 10-1 | 21 | 7 | 75.00% | 28 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31600 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 7 | 7 | 1 | 1 | 50.00% | 50.00% | 14 | 2 | TAIR8 |
Avg. embryo expression (dissected): '125.618' Avg. embryo expression (LCM): '86.2397' |
||||
| AT2G31600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.3875 x 10-2 | 24 | 2 | 4 | 14 | 92.31% | 77.78% | 26 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.006384' Avg. expression score for this sample: '94.6125' Avg. expression score in LCM sample: '37.1269' Tissue used: 'full endosperm' |
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| AT2G31590 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.90605 x 10-1 | 14 | 9 | 0 | 11 | 60.87% | 100.00% | 23 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '16.2018' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT2G31590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.05691 x 10-1 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31590 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 2 | 1 | 2 | 33.33% | 66.67% | 3 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '7.56965' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G31590 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 14 | 11 | 6 | 1 | 56.00% | 14.29% | 25 | 7 | TAIR8 |
Avg. embryo expression (dissected): '33.6542' Avg. embryo expression (LCM): '0' |
||||
| AT2G31590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31590 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.48572 x 10-1 | 5 | 4 | 55.56% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31585 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.38184 x 10-1 | 34 | 40 | 45.95% | 74 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31585 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.3564 x 10-2 | 22 | 8 | 73.33% | 30 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31585 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.2349 x 10-2 | 15 | 5 | 75.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31585 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.282 x 10-3 | 76 | 106 | 22 | 71 | 41.76% | 76.34% | 182 | 93 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000132' Avg. expression score for this sample: '670.631' Avg. expression score in LCM sample: '60.6583' Tissue used: 'full endosperm' |
|||||
| AT2G31585 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.37986 x 10-1 | 6 | 7 | 4 | 1 | 46.15% | 20.00% | 13 | 5 | TAIR8 |
Avg. embryo expression (dissected): '367.736' Avg. embryo expression (LCM): '134.741' |
||||
| AT2G31585 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.9276 x 10-2 | 5 | 20 | 3 | 9 | 20.00% | 75.00% | 25 | 12 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000132' Avg. expression score for this sample: '453.61' Avg. expression score in LCM sample: '60.6583' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G31580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '12.7333' Avg. expression score in LCM sample: '3.80676' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT2G31580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G31580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.07389 x 10-1 | 11 | 1 | 91.67% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31580 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 2 | 0 | 0 | 0.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '12.8232' Avg. embryo expression (LCM): '12.9981' |
|||||
| AT2G31580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 5 | 2 | 6 | 8 | 71.43% | 57.14% | 7 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '26.1246' Avg. expression score in LCM sample: '3.80676' Tissue used: 'full endosperm' |
|||||
| AT2G31580 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 2 | 66.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31570 | GPX2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.52092 x 10-1 | 9 | 1 | 90.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G31570 | GPX2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.406 x 10-3 | 7 | 1 | 0 | 21 | 87.50% | 100.00% | 8 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.005406' Avg. expression score for this sample: '573.624' Avg. expression score in LCM sample: '5.20306' Tissue used: 'full endosperm' |
||||
| AT2G31570 | GPX2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G31570 | GPX2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.005406' Avg. expression score for this sample: '104.254' Avg. expression score in LCM sample: '5.20306' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G31570 | GPX2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '99.5613' Avg. embryo expression (LCM): '81.5554' |
|||||
| AT2G31570 | GPX2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.04878 x 10-1 | 11 | 1 | 91.67% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G31560 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31560 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G31560 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.44444 x 10-1 | 3 | 0 | 0 | 2 | 100.00% | 100.00% | 3 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.685082' Avg. expression score for this sample: '83.4491' Avg. expression score in LCM sample: '70.6529' Tissue used: 'full endosperm' |
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| AT2G31560 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.82051 x 10-1 | 1 | 5 | 1 | 0 | 16.67% | 0.00% | 6 | 1 | TAIR8 |
Avg. embryo expression (dissected): '156.726' Avg. embryo expression (LCM): '76.532' |
||||
| AT2G31560 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 2 | 1 | 6 | 50.00% | 85.71% | 4 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.685082' Avg. expression score for this sample: '75.6188' Avg. expression score in LCM sample: '70.6529' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G31560 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31550 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G31550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT2G31550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G31550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G31550 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT2G31550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.606632' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT2G31540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.302555' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT2G31540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G31540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G31540 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.622438' Avg. embryo expression (LCM): '0' |
||||||
| AT2G31540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G31540 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G31530 | SCY2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.79575 x 10-1 | 40 | 15 | 72.73% | 55 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G31530 | SCY2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.70107 x 10-1 | 14 | 5 | 73.68% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G31530 | SCY2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.90665 x 10-1 | 9 | 0 | 100.00% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G31530 | SCY2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.68502 x 10-1 | 25 | 6 | 8 | 13 | 80.65% | 61.90% | 31 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.255142' Avg. expression score for this sample: '29.0953' Avg. expression score in LCM sample: '10.5237' Tissue used: 'full endosperm' |
||||
| AT2G31530 | SCY2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.91329 x 10-1 | 11 | 8 | 3 | 5 | 57.89% | 62.50% | 19 | 8 | TAIR8 |
Avg. embryo expression (dissected): '28.8341' Avg. embryo expression (LCM): '53.9391' |
|||
| AT2G31530 | SCY2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.94389 x 10-1 | 7 | 2 | 0 | 7 | 77.78% | 100.00% | 9 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.255142' Avg. expression score for this sample: '11.5203' Avg. expression score in LCM sample: '10.5237' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G31510 | ARI7 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.43017 x 10-1 | 9 | 0 | 3 | 6 | 100.00% | 66.67% | 9 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.814947' Avg. expression score for this sample: '145.847' Avg. expression score in LCM sample: '67.6986' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G31510 | ARI7 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G31510 | ARI7 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G31510 | ARI7 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 3 | 6 | 0 | 1 | 33.33% | 100.00% | 9 | 1 | TAIR8 |
Avg. embryo expression (dissected): '129.679' Avg. embryo expression (LCM): '72.149' |
|||
| AT2G31510 | ARI7 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.23143 x 10-1 | 6 | 7 | 5 | 4 | 46.15% | 44.44% | 13 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.814947' Avg. expression score for this sample: '202.706' Avg. expression score in LCM sample: '67.6986' Tissue used: 'full endosperm' |
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| AT2G31510 | ARI7 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.52615 x 10-1 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G31500 | CPK24 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.7958 x 10-2 | 0 | 5 | 0.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G31500 | CPK24 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.45017' Avg. expression score for this sample: '7.93195' Avg. expression score in LCM sample: '15.9913' Tissue used: 'full endosperm' |
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| AT2G31500 | CPK24 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31500 | CPK24 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.00431 x 10-1 | 2 | 1 | 14 | 14 | 66.67% | 50.00% | 3 | 28 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.45017' Avg. expression score for this sample: '21.2338' Avg. expression score in LCM sample: '15.9913' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G31500 | CPK24 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 2 | 1 | 2 | 0.00% | 66.67% | 2 | 3 | TAIR8 |
Avg. embryo expression (dissected): '10.1474' Avg. embryo expression (LCM): '0' |
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| AT2G31500 | CPK24 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.28571 x 10-1 | 0 | 3 | 0.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G31490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.5 x 10-6 | 226 | 56 | 80.14% | 282 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.37443 x 10-1 | 78 | 29 | 72.90% | 107 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.1194 x 10-1 | 181 | 127 | 116 | 314 | 58.77% | 73.02% | 308 | 430 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '496.124' Avg. expression score in LCM sample: '189.559' Tissue used: 'full endosperm' |
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| AT2G31490 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.2675 x 10-1 | 146 | 115 | 47 | 43 | 55.94% | 47.78% | 261 | 90 | TAIR8 |
Avg. embryo expression (dissected): '637.506' Avg. embryo expression (LCM): '422.533' |
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| AT2G31490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.46814 x 10-1 | 144 | 83 | 87 | 190 | 63.44% | 68.59% | 227 | 277 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '587.271' Avg. expression score in LCM sample: '189.559' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G31490 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.0 x 10-9 | 359 | 82 | 81.41% | 441 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31480 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.8 x 10-5 | 21 | 0 | 100.00% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 12 | 0 | 5 | 0 | 100.00% | 0.00% | 12 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.336591' Avg. expression score for this sample: '2.93229' Avg. expression score in LCM sample: '8.73056' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G31480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G31480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.4 x 10-9 | 0 | 44 | 0.00% | 44 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31480 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.28571 x 10-1 | 3 | 0 | 0 | 0 | 100.00% | 3 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.861913' Avg. embryo expression (LCM): '1.85867' |
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| AT2G31480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0314 x 10-1 | 5 | 1 | 11 | 2 | 83.33% | 15.38% | 6 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.336591' Avg. expression score for this sample: '2.21155' Avg. expression score in LCM sample: '8.73056' Tissue used: 'full endosperm' |
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| AT2G31470 | DOR | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 3 | 100.00% | 0 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.718524' Avg. expression score in LCM sample: '1.26402' Tissue used: 'full endosperm' |
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| AT2G31470 | DOR | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31470 | DOR | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '1.26402' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G31470 | DOR | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT2G31470 | DOR | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31470 | DOR | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G31460 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G31460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G31460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G31460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT2G31460 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT2G31460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G31450 | ATNTH1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 3 | 2 | 1 | 4 | 60.00% | 80.00% | 5 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '20.9447' Avg. expression score in LCM sample: '10.8177' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G31450 | ATNTH1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |