| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT2G38440 | SCAR2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.4922 x 10-2 | 142 | 30 | 62 | 134 | 82.56% | 68.37% | 172 | 196 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.111882' Avg. expression score for this sample: '216.887' Avg. expression score in LCM sample: '99.5784' Tissue used: 'full endosperm' |
||||
| AT2G38440 | SCAR2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.6501 x 10-1 | 27 | 8 | 77.14% | 35 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38440 | SCAR2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.3102 x 10-2 | 64 | 15 | 81.01% | 79 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38440 | SCAR2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.20071 x 10-1 | 51 | 37 | 18 | 15 | 57.95% | 45.45% | 88 | 33 | TAIR8 |
Avg. embryo expression (dissected): '136.713' Avg. embryo expression (LCM): '90.0827' |
|||
| AT2G38430 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.2381 x 10-1 | 0 | 4 | 0 | 1 | 0.00% | 100.00% | 4 | 1 | TAIR8 |
Avg. embryo expression (dissected): '23.7029' Avg. embryo expression (LCM): '35.0259' |
||||
| AT2G38430 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.6129 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38430 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38430 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.65322 x 10-1 | 14 | 3 | 0 | 6 | 82.35% | 100.00% | 17 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.032348' Avg. expression score for this sample: '48.5245' Avg. expression score in LCM sample: '44.5053' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G38430 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.04666 x 10-1 | 2 | 1 | 66.67% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38430 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.10619 x 10-1 | 18 | 1 | 5 | 14 | 94.74% | 73.68% | 19 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.032348' Avg. expression score for this sample: '62.9223' Avg. expression score in LCM sample: '44.5053' Tissue used: 'full endosperm' |
|||||
| AT2G38420 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.6252 x 10-2 | 68 | 5 | 37 | 78 | 93.15% | 67.83% | 73 | 115 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.079829' Avg. expression score for this sample: '144.446' Avg. expression score in LCM sample: '19.3278' Tissue used: 'full endosperm' |
|||||
| AT2G38420 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.45279 x 10-1 | 8 | 5 | 61.54% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38420 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.18272 x 10-1 | 123 | 61 | 66.85% | 184 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38420 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.95177 x 10-1 | 59 | 40 | 20 | 17 | 59.60% | 45.95% | 99 | 37 | TAIR8 |
Avg. embryo expression (dissected): '166.102' Avg. embryo expression (LCM): '105.166' |
||||
| AT2G38420 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.9 x 10-5 | 172 | 20 | 89.58% | 192 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38420 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 38 | 20 | 12 | 23 | 65.52% | 65.71% | 58 | 35 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.079829' Avg. expression score for this sample: '95.0966' Avg. expression score in LCM sample: '19.3278' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G38410 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.01071 x 10-1 | 52 | 13 | 24 | 40 | 80.00% | 62.50% | 65 | 64 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.008478' Avg. expression score for this sample: '284.085' Avg. expression score in LCM sample: '160.178' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G38410 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.0777 x 10-2 | 259 | 59 | 81.45% | 318 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38410 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.501 x 10-3 | 108 | 24 | 46 | 122 | 81.82% | 72.62% | 132 | 168 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.008478' Avg. expression score for this sample: '261.397' Avg. expression score in LCM sample: '160.178' Tissue used: 'full endosperm' |
|||||
| AT2G38410 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.47093 x 10-1 | 41 | 33 | 6 | 6 | 55.41% | 50.00% | 74 | 12 | TAIR8 |
Avg. embryo expression (dissected): '299.055' Avg. embryo expression (LCM): '141.987' |
||||
| AT2G38410 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.31554 x 10-1 | 165 | 69 | 70.51% | 234 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38410 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 24 | 8 | 75.00% | 32 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38400 | AGT3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38400 | AGT3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 11 | 2 | 84.62% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38400 | AGT3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 0 | 0 | 50.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '504.729' Avg. embryo expression (LCM): '204.441' |
||||
| AT2G38400 | AGT3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.72006 x 10-1 | 17 | 7 | 70.83% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38400 | AGT3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 3 | 3 | 0 | 3 | 50.00% | 100.00% | 6 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.077175' Avg. expression score for this sample: '353.484' Avg. expression score in LCM sample: '66.802' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G38400 | AGT3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.3215 x 10-2 | 7 | 1 | 0 | 17 | 87.50% | 100.00% | 8 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.077175' Avg. expression score for this sample: '1584.99' Avg. expression score in LCM sample: '66.802' Tissue used: 'full endosperm' |
||||
| AT2G38390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.285526' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT2G38390 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT2G38390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT2G38390 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38380 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38380 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '17.3058' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G38380 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 137 | 0 | 1 | 719 | 100.00% | 99.86% | 137 | 720 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1687.57' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT2G38380 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38380 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 15 | 0 | 100.00% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38380 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.211296' Avg. embryo expression (LCM): '0' |
||||||
| AT2G38370 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.29022 x 10-1 | 87 | 88 | 40 | 37 | 49.71% | 48.05% | 175 | 77 | TAIR8 |
Avg. embryo expression (dissected): '531.548' Avg. embryo expression (LCM): '278.687' |
||||
| AT2G38370 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.1441 x 10-2 | 8 | 9 | 47.06% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38370 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.70282 x 10-1 | 10 | 5 | 66.67% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38370 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.05035 x 10-1 | 56 | 26 | 25 | 53 | 68.29% | 67.95% | 82 | 78 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.162501' Avg. expression score for this sample: '182.172' Avg. expression score in LCM sample: '29.8809' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G38370 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.63 x 10-4 | 55 | 4 | 93.22% | 59 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38370 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.1258 x 10-2 | 98 | 22 | 25 | 43 | 81.67% | 63.24% | 120 | 68 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.162501' Avg. expression score for this sample: '238.206' Avg. expression score in LCM sample: '29.8809' Tissue used: 'full endosperm' |
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| AT2G38365 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT2G38365 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38365 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38365 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.804213' Avg. embryo expression (LCM): '0' |
||||||
| AT2G38365 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38365 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT2G38360 | PRA1.B4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 x 10-7 | 586 | 331 | 172 | 879 | 63.90% | 83.63% | 917 | 1051 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.2e-19' Avg. expression score for this sample: '990.262' Avg. expression score in LCM sample: '730.369' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G38360 | PRA1.B4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.35 x 10-4 | 819 | 182 | 81.82% | 1001 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38360 | PRA1.B4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.2 x 10-14 | 541 | 215 | 85 | 606 | 71.56% | 87.70% | 756 | 691 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.2e-19' Avg. expression score for this sample: '751.245' Avg. expression score in LCM sample: '730.369' Tissue used: 'full endosperm' |
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| AT2G38360 | PRA1.B4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.54577 x 10-1 | 192 | 296 | 33 | 96 | 39.34% | 74.42% | 488 | 129 | TAIR8 |
Avg. embryo expression (dissected): '498.275' Avg. embryo expression (LCM): '215.329' |
|||
| AT2G38360 | PRA1.B4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.7 x 10-13 | 1579 | 280 | 84.94% | 1859 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38360 | PRA1.B4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.2 x 10-5 | 295 | 46 | 86.51% | 341 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.42424 x 10-1 | 1 | 3 | 25.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38350 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.57591' Avg. embryo expression (LCM): '0' |
||||||
| AT2G38350 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.887248' Avg. expression score in LCM sample: '5.08548' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G38350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 4 | 1 | 1 | 1 | 80.00% | 50.00% | 5 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '9.68253' Avg. expression score in LCM sample: '5.08548' Tissue used: 'full endosperm' |
|||||
| AT2G38340 | DREB19 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 2 | 100.00% | 100.00% | 1 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.444444' Avg. expression score for this sample: '221.393' Avg. expression score in LCM sample: '8.21614' Tissue used: 'full endosperm' |
||||
| AT2G38340 | DREB19 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '100.959' Avg. embryo expression (LCM): '28.0684' |
|||||
| AT2G38340 | DREB19 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38340 | DREB19 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38340 | DREB19 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 2 | 100.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.444444' Avg. expression score for this sample: '91.0859' Avg. expression score in LCM sample: '8.21614' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G38340 | DREB19 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38330 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.68392 x 10-1 | 14 | 4 | 77.78% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38330 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.31294 x 10-1 | 6 | 9 | 9 | 8 | 40.00% | 47.06% | 15 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.715251' Avg. expression score for this sample: '36.9571' Avg. expression score in LCM sample: '15.1976' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G38330 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.07547 x 10-1 | 13 | 2 | 5 | 13 | 86.67% | 72.22% | 15 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.715251' Avg. expression score for this sample: '29.6277' Avg. expression score in LCM sample: '15.1976' Tissue used: 'full endosperm' |
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| AT2G38330 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38330 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 4 | 66.67% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38330 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 27 | 21 | 10 | 4 | 56.25% | 28.57% | 48 | 14 | TAIR8 |
Avg. embryo expression (dissected): '94.2635' Avg. embryo expression (LCM): '64.2371' |
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| AT2G38325 | MIR390A | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT2G38325 | MIR390A | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38325 | MIR390A | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38325 | MIR390A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G38325 | MIR390A | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38325 | MIR390A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT2G38320 | TBL34 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.52629' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT2G38320 | TBL34 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38320 | TBL34 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38320 | TBL34 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.13629' Avg. embryo expression (LCM): '6.55558' |
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| AT2G38320 | TBL34 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 0 | 100.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38320 | TBL34 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.167263' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G38310 | PYL4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 10 | 5 | 17 | 33 | 66.67% | 66.00% | 15 | 50 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.244699' Avg. expression score for this sample: '39.8444' Avg. expression score in LCM sample: '6.64346' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G38310 | PYL4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.3 x 10-6 | 56 | 0 | 100.00% | 56 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38310 | PYL4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.5553 x 10-2 | 25 | 3 | 4 | 17 | 89.29% | 80.95% | 28 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.244699' Avg. expression score for this sample: '30.1982' Avg. expression score in LCM sample: '6.64346' Tissue used: 'full endosperm' |
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| AT2G38310 | PYL4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 16 | 17 | 4 | 6 | 48.48% | 60.00% | 33 | 10 | TAIR8 |
Avg. embryo expression (dissected): '47.3063' Avg. embryo expression (LCM): '63.6469' |
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| AT2G38310 | PYL4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.9 x 10-5 | 39 | 0 | 100.00% | 39 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38310 | PYL4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.94576 x 10-1 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38304 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38304 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38304 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT2G38304 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38304 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G38304 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.947267' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |