| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT2G38905 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '296.993' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT2G38905 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '65.4106' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G38905 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38905 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '31.8937' Avg. embryo expression (LCM): '0' |
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| AT2G38900 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '102.43' Avg. embryo expression (LCM): '10.7753' |
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| AT2G38900 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2389.51' Avg. expression score in LCM sample: '113.541' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G38900 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38900 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '5381.85' Avg. expression score in LCM sample: '113.541' Tissue used: 'full endosperm' |
|||||||
| AT2G38900 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38900 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38890 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 12 | 1 | 92.31% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38890 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.1 | 0 | 0 | 0 | 8 | 100.00% | 0 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.102941' Avg. expression score for this sample: '7.75368' Avg. expression score in LCM sample: '1.26402' Tissue used: 'full endosperm' |
||||||
| AT2G38890 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 0 | 100.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38890 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38890 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.00111' Avg. embryo expression (LCM): '0' |
||||||
| AT2G38890 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.102941' Avg. expression score for this sample: '7.12992' Avg. expression score in LCM sample: '1.26402' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT2G38880 | NF-YB1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.01872 x 10-1 | 220 | 189 | 95 | 314 | 53.79% | 76.77% | 409 | 409 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.171068' Avg. expression score for this sample: '325.981' Avg. expression score in LCM sample: '64.7443' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G38880 | NF-YB1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.42443 x 10-1 | 63 | 19 | 76.83% | 82 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38880 | NF-YB1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.67834 x 10-1 | 168 | 230 | 48 | 64 | 42.21% | 57.14% | 398 | 112 | TAIR8 |
Avg. embryo expression (dissected): '333.82' Avg. embryo expression (LCM): '237.721' |
|||
| AT2G38880 | NF-YB1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.44 x 10-4 | 358 | 102 | 77.83% | 460 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38880 | NF-YB1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.9 x 10-7 | 266 | 57 | 82.35% | 323 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38880 | NF-YB1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.269 x 10-2 | 291 | 138 | 127 | 391 | 67.83% | 75.48% | 429 | 518 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.171068' Avg. expression score for this sample: '401.275' Avg. expression score in LCM sample: '64.7443' Tissue used: 'full endosperm' |
||||
| AT2G38870 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '5235.37' Avg. expression score in LCM sample: '1210.27' Tissue used: 'full endosperm' |
|||||||
| AT2G38870 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38870 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38870 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '329.107' Avg. embryo expression (LCM): '74.6105' |
||||||
| AT2G38870 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '4215.36' Avg. expression score in LCM sample: '1210.27' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT2G38870 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38860 | YLS5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.429 x 10-3 | 8 | 7 | 53.33% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38860 | YLS5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.73246 x 10-1 | 14 | 19 | 1 | 11 | 42.42% | 91.67% | 33 | 12 | TAIR8 |
Avg. embryo expression (dissected): '100.483' Avg. embryo expression (LCM): '53.2986' |
|||
| AT2G38860 | YLS5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.9 x 10-8 | 97 | 35 | 22 | 212 | 73.48% | 90.60% | 132 | 234 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '7.6e-12' Avg. expression score for this sample: '321.533' Avg. expression score in LCM sample: '24.3691' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G38860 | YLS5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.4 x 10-12 | 403 | 10 | 97.58% | 413 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38860 | YLS5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.4 x 10-5 | 44 | 11 | 9 | 83 | 80.00% | 90.22% | 55 | 92 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '7.6e-12' Avg. expression score for this sample: '132.299' Avg. expression score in LCM sample: '24.3691' Tissue used: 'full endosperm' |
||||
| AT2G38860 | YLS5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.2 x 10-5 | 219 | 10 | 95.63% | 229 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38840 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.84 x 10-4 | 64 | 3 | 95.52% | 67 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38840 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.12367 x 10-1 | 51 | 16 | 76.12% | 67 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38840 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.65329 x 10-1 | 16 | 6 | 5 | 23 | 72.73% | 82.14% | 22 | 28 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.51124' Avg. expression score for this sample: '43.0521' Avg. expression score in LCM sample: '24.8689' Tissue used: 'full endosperm' |
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| AT2G38840 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 8 | 5 | 8 | 17 | 61.54% | 68.00% | 13 | 25 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.51124' Avg. expression score for this sample: '31.7165' Avg. expression score in LCM sample: '24.8689' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G38840 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.71414 x 10-1 | 6 | 1 | 85.71% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38840 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.05707 x 10-1 | 11 | 16 | 2 | 4 | 40.74% | 66.67% | 27 | 6 | TAIR8 |
Avg. embryo expression (dissected): '44.2719' Avg. embryo expression (LCM): '38.2534' |
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| AT2G38830 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '25.2629' Avg. embryo expression (LCM): '3.44105' |
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| AT2G38830 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '7.53449' Avg. expression score in LCM sample: '2.68972' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G38830 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38830 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '17.2134' Avg. expression score in LCM sample: '2.68972' Tissue used: 'full endosperm' |
|||||||
| AT2G38830 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38830 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38823 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38823 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '5.41487' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT2G38823 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38823 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38823 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '6.53111' Avg. embryo expression (LCM): '7.33421' |
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| AT2G38823 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2.12074' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G38820 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 6 | 3 | 3 | 6 | 66.67% | 66.67% | 9 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '94.4422' Avg. expression score in LCM sample: '21.5618' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G38820 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.09755 x 10-1 | 13 | 4 | 76.47% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38820 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.08392 x 10-1 | 3 | 1 | 1 | 3 | 75.00% | 75.00% | 4 | 4 | TAIR8 |
Avg. embryo expression (dissected): '52.1989' Avg. embryo expression (LCM): '15.9117' |
||||
| AT2G38820 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 4 | 66.67% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38820 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.971 x 10-3 | 27 | 3 | 90.00% | 30 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38820 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 21 | 18 | 3 | 17 | 53.85% | 85.00% | 39 | 20 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '246.649' Avg. expression score in LCM sample: '21.5618' Tissue used: 'full endosperm' |
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| AT2G38810 | HTA8 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 4 | 1 | 4 | 9 | 80.00% | 69.23% | 5 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.063776' Avg. expression score for this sample: '175.285' Avg. expression score in LCM sample: '263.916' Tissue used: 'full endosperm' |
||||
| AT2G38810 | HTA8 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 14 | 2 | 87.50% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38810 | HTA8 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.2325 x 10-2 | 13 | 11 | 54.17% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38810 | HTA8 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 32 | 28 | 8 | 4 | 53.33% | 33.33% | 60 | 12 | TAIR8 |
Avg. embryo expression (dissected): '1370.7' Avg. embryo expression (LCM): '1376.86' |
|||
| AT2G38810 | HTA8 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.3875 x 10-2 | 20 | 3 | 3 | 18 | 86.96% | 85.71% | 23 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.063776' Avg. expression score for this sample: '450.58' Avg. expression score in LCM sample: '263.916' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G38810 | HTA8 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.87348 x 10-1 | 9 | 3 | 75.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38800 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38800 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '5.36802' Avg. embryo expression (LCM): '1.82099' |
||||||
| AT2G38800 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '13.3007' Avg. expression score in LCM sample: '4.2477' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G38800 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38800 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '228.637' Avg. expression score in LCM sample: '4.2477' Tissue used: 'full endosperm' |
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| AT2G38800 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G38790 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38790 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38790 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.7683 x 10-2 | 15 | 0 | 1 | 2 | 100.00% | 66.67% | 15 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.231989' Avg. expression score for this sample: '5.28307' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT2G38790 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.231989' Avg. expression score for this sample: '1.45398' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G38790 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38790 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 3 | 0 | 0 | 50.00% | 6 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.89047' Avg. embryo expression (LCM): '0' |
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| AT2G38780 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.19363 x 10-1 | 24 | 35 | 5 | 9 | 40.68% | 64.29% | 59 | 14 | TAIR8 |
Avg. embryo expression (dissected): '45.16' Avg. embryo expression (LCM): '48.7524' |
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| AT2G38780 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 38 | 18 | 19 | 34 | 67.86% | 64.15% | 56 | 53 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.473838' Avg. expression score for this sample: '46.0793' Avg. expression score in LCM sample: '10.6413' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G38780 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.84296 x 10-1 | 18 | 5 | 78.26% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38780 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.38682 x 10-1 | 91 | 39 | 35 | 89 | 70.00% | 71.77% | 130 | 124 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.473838' Avg. expression score for this sample: '73.2317' Avg. expression score in LCM sample: '10.6413' Tissue used: 'full endosperm' |
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| AT2G38780 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.21738 x 10-1 | 36 | 13 | 73.47% | 49 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38780 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.8 x 10-6 | 54 | 2 | 96.43% | 56 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38770 | EMB2765 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.20283 x 10-1 | 240 | 115 | 67.61% | 355 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38770 | EMB2765 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.58686 x 10-1 | 81 | 27 | 69 | 165 | 75.00% | 70.51% | 108 | 234 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.621937' Avg. expression score for this sample: '109.507' Avg. expression score in LCM sample: '59.4237' Tissue used: 'full endosperm' |
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| AT2G38770 | EMB2765 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.8 x 10-5 | 269 | 61 | 81.52% | 330 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38770 | EMB2765 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.66278 x 10-1 | 19 | 5 | 79.17% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G38770 | EMB2765 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.04089 x 10-1 | 51 | 47 | 21 | 11 | 52.04% | 34.38% | 98 | 32 | TAIR8 |
Avg. embryo expression (dissected): '124.786' Avg. embryo expression (LCM): '156.492' |
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| AT2G38770 | EMB2765 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.25609 x 10-1 | 31 | 28 | 21 | 38 | 52.54% | 64.41% | 59 | 59 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.621937' Avg. expression score for this sample: '68.0393' Avg. expression score in LCM sample: '59.4237' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G38760 | ANNAT3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '194.223' Avg. expression score in LCM sample: '149.243' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G38760 | ANNAT3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38760 | ANNAT3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '29.3113' Avg. embryo expression (LCM): '18.3606' |
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| AT2G38760 | ANNAT3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38760 | ANNAT3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38760 | ANNAT3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '168.406' Avg. expression score in LCM sample: '149.243' Tissue used: 'full endosperm' |
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| AT2G38750 | ANNAT4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 3 | 0 | 0 | 1 | 100.00% | 100.00% | 3 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.444444' Avg. expression score for this sample: '10.5764' Avg. expression score in LCM sample: '7.7311' Tissue used: 'full endosperm' |
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| AT2G38750 | ANNAT4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38750 | ANNAT4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G38750 | ANNAT4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.55486' Avg. embryo expression (LCM): '0' |
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| AT2G38750 | ANNAT4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.444444' Avg. expression score for this sample: '13.761' Avg. expression score in LCM sample: '7.7311' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G38750 | ANNAT4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |