| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT2G40950 | BZIP17 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 31 | 12 | 72.09% | 43 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40950 | BZIP17 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.7 x 10-10 | 258 | 24 | 91.49% | 282 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40950 | BZIP17 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.8223 x 10-1 | 22 | 24 | 13 | 6 | 47.83% | 31.58% | 46 | 19 | TAIR8 |
Avg. embryo expression (dissected): '159.654' Avg. embryo expression (LCM): '95.2694' |
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| AT2G40950 | BZIP17 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.08815 x 10-1 | 110 | 41 | 54 | 129 | 72.85% | 70.49% | 151 | 183 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.057497' Avg. expression score for this sample: '328.199' Avg. expression score in LCM sample: '100.166' Tissue used: 'full endosperm' |
||||
| AT2G40950 | BZIP17 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.04289 x 10-1 | 34 | 14 | 12 | 50 | 70.83% | 80.65% | 48 | 62 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.057497' Avg. expression score for this sample: '171.007' Avg. expression score in LCM sample: '100.166' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G40950 | BZIP17 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.9 x 10-5 | 273 | 46 | 85.58% | 319 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40940 | ERS1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G40940 | ERS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 1 | 3 | 100.00% | 75.00% | 2 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.733718' Avg. expression score for this sample: '479.891' Avg. expression score in LCM sample: '229.376' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G40940 | ERS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 5 | 3 | 1 | 6 | 62.50% | 85.71% | 8 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.733718' Avg. expression score for this sample: '235.764' Avg. expression score in LCM sample: '229.376' Tissue used: 'full endosperm' |
||||
| AT2G40940 | ERS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.36749 x 10-1 | 10 | 1 | 90.91% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40940 | ERS1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G40940 | ERS1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '133.084' Avg. embryo expression (LCM): '53.7884' |
||||
| AT2G40935 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '13.2539' Avg. embryo expression (LCM): '17.3308' |
||||||
| AT2G40935 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G40935 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 3 | 0 | 0 | 0 | 100.00% | 3 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '14.7789' Avg. expression score in LCM sample: '14.7567' Tissue used: 'full endosperm' |
||||||
| AT2G40935 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G40935 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 1 | 1 | 50.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '18.1654' Avg. expression score in LCM sample: '14.7567' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT2G40935 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G40930 | UBP5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.49 x 10-4 | 64 | 5 | 92.75% | 69 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40930 | UBP5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.73609 x 10-1 | 15 | 11 | 8 | 15 | 57.69% | 65.22% | 26 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.257009' Avg. expression score for this sample: '46.1339' Avg. expression score in LCM sample: '59.9969' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G40930 | UBP5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.07941 x 10-1 | 15 | 3 | 83.33% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40930 | UBP5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.1798 x 10-2 | 36 | 4 | 90.00% | 40 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40930 | UBP5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 12 | 10 | 5 | 5 | 54.55% | 50.00% | 22 | 10 | TAIR8 |
Avg. embryo expression (dissected): '64.4297' Avg. embryo expression (LCM): '74.4347' |
|||
| AT2G40930 | UBP5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.7617 x 10-2 | 32 | 15 | 6 | 45 | 68.09% | 88.24% | 47 | 51 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.257009' Avg. expression score for this sample: '91.1753' Avg. expression score in LCM sample: '59.9969' Tissue used: 'full endosperm' |
||||
| AT2G40925 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.00623 x 10-1 | 21 | 3 | 15 | 3 | 87.50% | 16.67% | 24 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.425211' Avg. expression score for this sample: '20.735' Avg. expression score in LCM sample: '1.10234' Tissue used: 'full endosperm' |
|||||
| AT2G40925 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.60714 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G40925 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G40925 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.93064 x 10-1 | 15 | 3 | 6 | 1 | 83.33% | 14.29% | 18 | 7 | TAIR8 |
Avg. embryo expression (dissected): '22.7345' Avg. embryo expression (LCM): '1.88379' |
||||
| AT2G40925 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 5 | 0 | 5 | 1 | 100.00% | 16.67% | 5 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.425211' Avg. expression score for this sample: '5.64168' Avg. expression score in LCM sample: '1.10234' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G40925 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.90086 x 10-1 | 3 | 4 | 42.86% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G40920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G40920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.80172 x 10-1 | 6 | 1 | 5 | 0 | 85.71% | 0.00% | 7 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.131294' Avg. expression score for this sample: '10.7553' Avg. expression score in LCM sample: '17.6375' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G40920 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.373 x 10-2 | 12 | 0 | 0 | 0 | 100.00% | 12 | 0 | TAIR8 |
Avg. embryo expression (dissected): '14.5734' Avg. embryo expression (LCM): '14.2791' |
|||||
| AT2G40920 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.2 x 10-9 | 46 | 0 | 100.00% | 46 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G40920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.04927 x 10-1 | 8 | 3 | 9 | 0 | 72.73% | 0.00% | 11 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.131294' Avg. expression score for this sample: '13.5691' Avg. expression score in LCM sample: '17.6375' Tissue used: 'full endosperm' |
|||||
| AT2G40920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G40910 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G40910 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G40910 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT2G40910 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.70511' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT2G40910 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.18086' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G40910 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G40900 | UMAMIT11 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40900 | UMAMIT11 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.047826' Avg. expression score for this sample: '2.07529' Avg. expression score in LCM sample: '1.80784' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G40900 | UMAMIT11 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.6584 x 10-2 | 12 | 0 | 0 | 0 | 100.00% | 12 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.047826' Avg. expression score for this sample: '14.794' Avg. expression score in LCM sample: '1.80784' Tissue used: 'full endosperm' |
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| AT2G40900 | UMAMIT11 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 34 | 0 | 100.00% | 34 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40900 | UMAMIT11 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40900 | UMAMIT11 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
|||||
| AT2G40890 | CYP98A3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.6039 x 10-1 | 118 | 173 | 20 | 44 | 40.55% | 68.75% | 291 | 64 | TAIR8 |
Avg. embryo expression (dissected): '207.778' Avg. embryo expression (LCM): '82.7485' |
|||
| AT2G40890 | CYP98A3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.3 x 10-5 | 10 | 26 | 27.78% | 36 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40890 | CYP98A3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.24418 x 10-1 | 38 | 36 | 27 | 80 | 51.35% | 74.77% | 74 | 107 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.589364' Avg. expression score for this sample: '64.9424' Avg. expression score in LCM sample: '47.6359' Tissue used: 'full endosperm' |
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| AT2G40890 | CYP98A3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.35 x 10-4 | 19 | 0 | 100.00% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40890 | CYP98A3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.67999 x 10-1 | 71 | 55 | 14 | 52 | 56.35% | 78.79% | 126 | 66 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.589364' Avg. expression score for this sample: '76.4453' Avg. expression score in LCM sample: '47.6359' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G40890 | CYP98A3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.34002 x 10-1 | 11 | 2 | 84.62% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40880 | CYSA | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 9 | 4 | 69.23% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40880 | CYSA | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 2 | 0 | 0 | 0.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '13.123' Avg. expression score in LCM sample: '2.33697' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G40880 | CYSA | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G40880 | CYSA | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.1049 x 10-1 | 7 | 1 | 87.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40880 | CYSA | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '6.05954' Avg. embryo expression (LCM): '0' |
|||||
| AT2G40880 | CYSA | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 0 | 0 | 1 | 100.00% | 100.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '19.5013' Avg. expression score in LCM sample: '2.33697' Tissue used: 'full endosperm' |
||||
| AT2G40860 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.57394 x 10-1 | 12 | 2 | 4 | 14 | 85.71% | 77.78% | 14 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.233022' Avg. expression score for this sample: '70.7186' Avg. expression score in LCM sample: '28.4993' Tissue used: 'full endosperm' |
|||||
| AT2G40860 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.4438 x 10-2 | 18 | 13 | 58.06% | 31 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G40860 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G40860 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.37986 x 10-1 | 6 | 8 | 3 | 1 | 42.86% | 25.00% | 14 | 4 | TAIR8 |
Avg. embryo expression (dissected): '95.5201' Avg. embryo expression (LCM): '39.0697' |
||||
| AT2G40860 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 5 | 3 | 0 | 5 | 62.50% | 100.00% | 8 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.233022' Avg. expression score for this sample: '56.1703' Avg. expression score in LCM sample: '28.4993' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G40860 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 17 | 4 | 80.95% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G40850 | PI4K GAMMA 1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.197 x 10-3 | 18 | 0 | 100.00% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40850 | PI4K GAMMA 1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.37136 x 10-1 | 10 | 3 | 13 | 12 | 76.92% | 48.00% | 13 | 25 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.632395' Avg. expression score for this sample: '24.4157' Avg. expression score in LCM sample: '7.0697' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G40850 | PI4K GAMMA 1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 4 | 9 | 3 | 6 | 30.77% | 66.67% | 13 | 9 | TAIR8 |
Avg. embryo expression (dissected): '25.0768' Avg. embryo expression (LCM): '9.06729' |
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| AT2G40850 | PI4K GAMMA 1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.97861 x 10-1 | 26 | 8 | 76.47% | 34 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40850 | PI4K GAMMA 1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 23 | 4 | 11 | 8 | 85.19% | 42.11% | 27 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.632395' Avg. expression score for this sample: '22.1272' Avg. expression score in LCM sample: '7.0697' Tissue used: 'full endosperm' |
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| AT2G40850 | PI4K GAMMA 1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.76471 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40840 | DPE2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.84301 x 10-1 | 62 | 17 | 78.48% | 79 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40840 | DPE2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 540 | 8 | 98.54% | 548 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40840 | DPE2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.13737 x 10-1 | 66 | 59 | 19 | 25 | 52.80% | 56.82% | 125 | 44 | TAIR8 |
Avg. embryo expression (dissected): '110.129' Avg. embryo expression (LCM): '68.6075' |
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| AT2G40840 | DPE2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.2 x 10-6 | 237 | 109 | 91 | 440 | 68.50% | 82.86% | 346 | 531 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.4e-06' Avg. expression score for this sample: '200.521' Avg. expression score in LCM sample: '78.0312' Tissue used: 'full endosperm' |
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| AT2G40840 | DPE2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.97231 x 10-1 | 94 | 46 | 44 | 124 | 67.14% | 73.81% | 140 | 168 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.4e-06' Avg. expression score for this sample: '113.952' Avg. expression score in LCM sample: '78.0312' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G40840 | DPE2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.9 x 10-17 | 326 | 20 | 94.22% | 346 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40830 | RHC1A | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.6164 x 10-2 | 11 | 0 | 100.00% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40830 | RHC1A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 17 | 10 | 8 | 16 | 62.96% | 66.67% | 27 | 24 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.229491' Avg. expression score for this sample: '193.427' Avg. expression score in LCM sample: '50.1346' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G40830 | RHC1A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.7829 x 10-2 | 37 | 5 | 12 | 29 | 88.10% | 70.73% | 42 | 41 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.229491' Avg. expression score for this sample: '157.162' Avg. expression score in LCM sample: '50.1346' Tissue used: 'full endosperm' |
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| AT2G40830 | RHC1A | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.9 x 10-5 | 52 | 1 | 98.11% | 53 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40830 | RHC1A | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 1 | 66.67% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40830 | RHC1A | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.23597 x 10-1 | 6 | 20 | 11 | 14 | 23.08% | 56.00% | 26 | 25 | TAIR8 |
Avg. embryo expression (dissected): '231.951' Avg. embryo expression (LCM): '60.8212' |
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| AT2G40820 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.86251 x 10-1 | 237 | 210 | 187 | 183 | 53.02% | 49.46% | 447 | 370 | TAIR8 |
Avg. embryo expression (dissected): '510.985' Avg. embryo expression (LCM): '167.167' |
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| AT2G40820 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1028 | 112 | 90.18% | 1140 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G40820 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.8 x 10-4 | 226 | 81 | 52 | 211 | 73.62% | 80.23% | 307 | 263 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.024835' Avg. expression score for this sample: '166.737' Avg. expression score in LCM sample: '45.9457' Tissue used: 'full endosperm' |
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| AT2G40820 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.49429 x 10-1 | 102 | 36 | 73.91% | 138 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G40820 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.00837 x 10-1 | 203 | 87 | 101 | 153 | 70.00% | 60.24% | 290 | 254 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.024835' Avg. expression score for this sample: '193.038' Avg. expression score in LCM sample: '45.9457' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G40820 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.1 x 10-5 | 1138 | 318 | 78.16% | 1456 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G40810 | ATG18C | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.927 x 10-3 | 102 | 7 | 93.58% | 109 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40810 | ATG18C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.00623 x 10-1 | 8 | 13 | 5 | 16 | 38.10% | 76.19% | 21 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000022' Avg. expression score for this sample: '58.706' Avg. expression score in LCM sample: '28.999' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G40810 | ATG18C | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.49251 x 10-1 | 17 | 2 | 89.47% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40810 | ATG18C | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.78 x 10-4 | 160 | 9 | 94.67% | 169 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G40810 | ATG18C | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.88877 x 10-1 | 8 | 12 | 7 | 2 | 40.00% | 22.22% | 20 | 9 | TAIR8 |
Avg. embryo expression (dissected): '55.3794' Avg. embryo expression (LCM): '18.3858' |
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| AT2G40810 | ATG18C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.9 x 10-8 | 64 | 9 | 18 | 130 | 87.67% | 87.84% | 73 | 148 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000022' Avg. expression score for this sample: '115.571' Avg. expression score in LCM sample: '28.999' Tissue used: 'full endosperm' |
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| AT2G40805 | MIR319C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT2G40805 | MIR319C | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G40805 | MIR319C | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G40805 | MIR319C | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |