| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT2G42610 | LSH10 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.502895' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT2G42610 | LSH10 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.291195' Avg. embryo expression (LCM): '0' |
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| AT2G42600 | PPC2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.29079 x 10-1 | 54 | 54 | 17 | 32 | 50.00% | 65.31% | 108 | 49 | TAIR8 |
Avg. embryo expression (dissected): '273.964' Avg. embryo expression (LCM): '207.769' |
|||
| AT2G42600 | PPC2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.32723 x 10-1 | 19 | 5 | 79.17% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G42600 | PPC2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.9 x 10-6 | 92 | 6 | 93.88% | 98 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G42600 | PPC2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.18573 x 10-1 | 40 | 20 | 16 | 54 | 66.67% | 77.14% | 60 | 70 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.217475' Avg. expression score for this sample: '120.64' Avg. expression score in LCM sample: '85.0862' Tissue used: 'full endosperm' |
||||
| AT2G42600 | PPC2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.54521 x 10-1 | 36 | 24 | 13 | 59 | 60.00% | 81.94% | 60 | 72 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.217475' Avg. expression score for this sample: '153.992' Avg. expression score in LCM sample: '85.0862' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G42600 | PPC2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.28 x 10-4 | 51 | 4 | 92.73% | 55 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G42590 | GRF9 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42590 | GRF9 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1530.95' Avg. expression score in LCM sample: '252.466' Tissue used: 'full endosperm' |
||||||
| AT2G42590 | GRF9 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42590 | GRF9 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '720.245' Avg. embryo expression (LCM): '442.589' |
|||||
| AT2G42590 | GRF9 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42590 | GRF9 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1529.32' Avg. expression score in LCM sample: '252.466' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT2G42580 | TTL3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 65 | 38 | 29 | 70 | 63.11% | 70.71% | 103 | 99 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.05334' Avg. expression score for this sample: '32.6922' Avg. expression score in LCM sample: '10.1269' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G42580 | TTL3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.30407 x 10-1 | 234 | 74 | 75.97% | 308 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G42580 | TTL3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.2 x 10-21 | 355 | 23 | 93.92% | 378 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G42580 | TTL3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 32 | 12 | 72.73% | 44 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G42580 | TTL3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.7486 x 10-2 | 196 | 67 | 86 | 216 | 74.52% | 71.52% | 263 | 302 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.05334' Avg. expression score for this sample: '83.2546' Avg. expression score in LCM sample: '10.1269' Tissue used: 'full endosperm' |
||||
| AT2G42580 | TTL3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 127 | 128 | 47 | 50 | 49.80% | 51.55% | 255 | 97 | TAIR8 |
Avg. embryo expression (dissected): '96.1926' Avg. embryo expression (LCM): '66.7112' |
|||
| AT2G42570 | TBL39 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 1 | 1 | 0 | 66.67% | 0.00% | 3 | 1 | TAIR8 |
Avg. embryo expression (dissected): '95.2533' Avg. embryo expression (LCM): '69.6247' |
|||
| AT2G42570 | TBL39 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42570 | TBL39 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G42570 | TBL39 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '10.6447' Avg. expression score in LCM sample: '4.233' Tissue used: 'full endosperm' |
||||||
| AT2G42570 | TBL39 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '6.14787' Avg. expression score in LCM sample: '4.233' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G42570 | TBL39 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42560 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.6 x 10-10 | 137 | 162 | 45.82% | 299 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42560 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.73279 x 10-1 | 13 | 23 | 4 | 27 | 36.11% | 87.10% | 36 | 31 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.961167' Avg. expression score for this sample: '268.48' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G42560 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.00188 x 10-1 | 263 | 118 | 170 | 332 | 69.03% | 66.14% | 381 | 502 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.961167' Avg. expression score for this sample: '1476.23' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT2G42560 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.45677 x 10-1 | 133 | 57 | 70.00% | 190 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42560 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.08392 x 10-1 | 6 | 2 | 0 | 0 | 75.00% | 8 | 0 | TAIR8 |
Avg. embryo expression (dissected): '25.4172' Avg. embryo expression (LCM): '0' |
|||||
| AT2G42560 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.1351 x 10-1 | 107 | 49 | 68.59% | 156 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42550 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G42550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G42550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.336612' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT2G42550 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.719958' Avg. embryo expression (LCM): '0' |
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| AT2G42550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT2G42550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G42540 | COR15A | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.28001 x 10-1 | 28 | 3 | 90.32% | 31 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G42540 | COR15A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.68582 x 10-1 | 7 | 1 | 0 | 7 | 87.50% | 100.00% | 8 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.021956' Avg. expression score for this sample: '6.13109' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G42540 | COR15A | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.28571 x 10-1 | 0 | 0 | 3 | 0 | 0.00% | 0 | 3 | TAIR8 |
Avg. embryo expression (dissected): '3.53372' Avg. embryo expression (LCM): '0' |
||||
| AT2G42540 | COR15A | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 19 | 0 | 100.00% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G42540 | COR15A | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.5017 x 10-2 | 5 | 4 | 55.56% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G42540 | COR15A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.1 | 4 | 0 | 0 | 4 | 100.00% | 100.00% | 4 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.021956' Avg. expression score for this sample: '3.01806' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT2G42530 | COR15B | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2.41652' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT2G42530 | COR15B | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42530 | COR15B | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '25.3174' Avg. embryo expression (LCM): '9.64499' |
|||||
| AT2G42530 | COR15B | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42530 | COR15B | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2.77599' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G42530 | COR15B | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42520 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.3 x 10-6 | 328 | 93 | 77.91% | 421 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42520 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.7581 x 10-2 | 709 | 331 | 413 | 614 | 68.17% | 59.79% | 1040 | 1027 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.819638' Avg. expression score for this sample: '381.71' Avg. expression score in LCM sample: '305.746' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G42520 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.6 x 10-11 | 504 | 128 | 79.75% | 632 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42520 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.6 x 10-8 | 200 | 41 | 82.99% | 241 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42520 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.466 x 10-3 | 282 | 108 | 78 | 228 | 72.31% | 74.51% | 390 | 306 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.819638' Avg. expression score for this sample: '336.427' Avg. expression score in LCM sample: '305.746' Tissue used: 'full endosperm' |
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| AT2G42520 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.12347 x 10-1 | 720 | 580 | 271 | 193 | 55.38% | 41.59% | 1300 | 464 | TAIR8 |
Avg. embryo expression (dissected): '527.487' Avg. embryo expression (LCM): '337.323' |
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| AT2G42510 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.15491 x 10-1 | 31 | 15 | 3 | 4 | 67.39% | 57.14% | 46 | 7 | TAIR8 |
Avg. embryo expression (dissected): '25.2039' Avg. embryo expression (LCM): '12.8097' |
||||
| AT2G42510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 2 | 71.43% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42510 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.0468 x 10-2 | 56 | 8 | 87.50% | 64 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.05679 x 10-1 | 48 | 9 | 12 | 23 | 84.21% | 65.71% | 57 | 35 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.224894' Avg. expression score for this sample: '44.4967' Avg. expression score in LCM sample: '9.74472' Tissue used: 'full endosperm' |
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| AT2G42510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 15 | 3 | 10 | 9 | 83.33% | 47.37% | 18 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.224894' Avg. expression score for this sample: '17.3835' Avg. expression score in LCM sample: '9.74472' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G42510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.56175 x 10-1 | 39 | 15 | 72.22% | 54 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42500 | PP2A-3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.46963 x 10-1 | 101 | 26 | 79.53% | 127 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G42500 | PP2A-3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 42 | 39 | 20 | 77 | 51.85% | 79.38% | 81 | 97 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.012336' Avg. expression score for this sample: '159.113' Avg. expression score in LCM sample: '55.808' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G42500 | PP2A-3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.136 x 10-3 | 82 | 25 | 37 | 149 | 76.64% | 80.11% | 107 | 186 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.012336' Avg. expression score for this sample: '128.757' Avg. expression score in LCM sample: '55.808' Tissue used: 'full endosperm' |
||||
| AT2G42500 | PP2A-3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.71274 x 10-1 | 13 | 3 | 81.25% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G42500 | PP2A-3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.28821 x 10-1 | 64 | 77 | 18 | 8 | 45.39% | 30.77% | 141 | 26 | TAIR8 |
Avg. embryo expression (dissected): '198.335' Avg. embryo expression (LCM): '149.51' |
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| AT2G42500 | PP2A-3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.5 x 10-5 | 147 | 17 | 89.63% | 164 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G42490 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.19768 x 10-1 | 1012 | 329 | 75.47% | 1341 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.61121 x 10-1 | 33 | 16 | 67.35% | 49 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.6 x 10-5 | 166 | 24 | 44 | 120 | 87.37% | 73.17% | 190 | 164 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000749' Avg. expression score for this sample: '379.43' Avg. expression score in LCM sample: '237.636' Tissue used: 'full endosperm' |
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| AT2G42490 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.69982 x 10-1 | 24 | 14 | 10 | 8 | 63.16% | 44.44% | 38 | 18 | TAIR8 |
Avg. embryo expression (dissected): '182.559' Avg. embryo expression (LCM): '77.8506' |
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| AT2G42490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.94568 x 10-1 | 55 | 15 | 29 | 28 | 78.57% | 49.12% | 70 | 57 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000749' Avg. expression score for this sample: '263.739' Avg. expression score in LCM sample: '237.636' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G42490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.6854 x 10-2 | 581 | 226 | 72.00% | 807 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42485 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.96154 x 10-1 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42485 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.66128 x 10-1 | 14 | 0 | 10 | 0 | 100.00% | 0.00% | 14 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.637136' Avg. expression score for this sample: '46.6108' Avg. expression score in LCM sample: '36.2157' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G42485 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.1629 x 10-2 | 17 | 0 | 4 | 0 | 100.00% | 0.00% | 17 | 4 | TAIR8 |
Avg. embryo expression (dissected): '58.8046' Avg. embryo expression (LCM): '118.628' |
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| AT2G42485 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.96154 x 10-1 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42485 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.52 x 10-4 | 19 | 0 | 100.00% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42485 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 8 | 0 | 6 | 0 | 100.00% | 0.00% | 8 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.637136' Avg. expression score for this sample: '22.6121' Avg. expression score in LCM sample: '36.2157' Tissue used: 'full endosperm' |
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| AT2G42480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.078596' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT2G42480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42480 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.08392 x 10-1 | 1 | 5 | 1 | 1 | 16.67% | 50.00% | 6 | 2 | TAIR8 |
Avg. embryo expression (dissected): '1.27736' Avg. embryo expression (LCM): '.540019' |
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| AT2G42480 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G42480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 0 | 0 | 2 | 100.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.226329' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G42480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G42470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 1 | 85.71% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.92378' Avg. expression score in LCM sample: '9.8476' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G42470 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.1 | 0 | 3 | 0.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G42470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.80295' Avg. expression score in LCM sample: '9.8476' Tissue used: 'full endosperm' |
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| AT2G42470 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.108047' Avg. embryo expression (LCM): '0' |
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| AT2G42460 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.563967' Avg. embryo expression (LCM): '0' |
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| AT2G42460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G42460 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G42460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.28704' Avg. expression score in LCM sample: '8.90694' Tissue used: 'full endosperm' |
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| AT2G42460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.17172' Avg. expression score in LCM sample: '8.90694' Tissue used: 'pure endosperm, no chalazal' |
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| AT2G42460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 2 | 66.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42450 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.50761 x 10-1 | 9 | 4 | 69.23% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G42450 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.77617 x 10-1 | 5 | 1 | 2 | 6 | 83.33% | 75.00% | 6 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.054443' Avg. expression score for this sample: '42.5745' Avg. expression score in LCM sample: '34.3196' Tissue used: 'pure endosperm, no chalazal' |