| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT2G45770 | CPFTSY | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.23052 x 10-1 | 14 | 2 | 87.50% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G45770 | CPFTSY | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 3 | 2 | 0 | 5 | 60.00% | 100.00% | 5 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.15827' Avg. expression score for this sample: '36.3265' Avg. expression score in LCM sample: '22.6642' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G45760 | BAP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '16.221' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT2G45760 | BAP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 3 | 72.73% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G45760 | BAP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G45760 | BAP2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '23.1829' Avg. embryo expression (LCM): '0' |
||||
| AT2G45760 | BAP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 15 | 1 | 93.75% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G45760 | BAP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 3 | 100.00% | 0 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '16.949' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT2G45750 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '22.4518' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT2G45750 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G45750 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G45750 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G45750 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '4.68452' Avg. embryo expression (LCM): '.590253' |
||||||
| AT2G45750 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '4.95832' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT2G45740 | PEX11D | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 11 | 8 | 5 | 19 | 57.89% | 79.17% | 19 | 24 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000013' Avg. expression score for this sample: '145.012' Avg. expression score in LCM sample: '25.4715' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G45740 | PEX11D | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.51186 x 10-1 | 7 | 7 | 1 | 5 | 50.00% | 83.33% | 14 | 6 | TAIR8 |
Avg. embryo expression (dissected): '76.268' Avg. embryo expression (LCM): '36.9976' |
|||
| AT2G45740 | PEX11D | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.42165 x 10-1 | 49 | 6 | 89.09% | 55 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G45740 | PEX11D | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.6 x 10-6 | 66 | 52 | 20 | 243 | 55.93% | 92.40% | 118 | 263 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000013' Avg. expression score for this sample: '291.001' Avg. expression score in LCM sample: '25.4715' Tissue used: 'full endosperm' |
||||
| AT2G45740 | PEX11D | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.5 x 10-7 | 165 | 7 | 95.93% | 172 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G45740 | PEX11D | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.818 x 10-3 | 187 | 23 | 89.05% | 210 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G45730 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 15 | 2 | 88.24% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G45730 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G45730 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 7 | 0 | 0 | 53.33% | 15 | 0 | TAIR8 |
Avg. embryo expression (dissected): '37.745' Avg. embryo expression (LCM): '34.1091' |
|||||
| AT2G45730 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.9409 x 10-2 | 21 | 12 | 63.64% | 33 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G45730 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.89847 x 10-1 | 3 | 1 | 1 | 10 | 75.00% | 90.91% | 4 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.165322' Avg. expression score for this sample: '10.2361' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT2G45730 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.23077 x 10-1 | 2 | 1 | 0 | 5 | 66.67% | 100.00% | 3 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.165322' Avg. expression score for this sample: '6.69323' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G45720 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '302.861' Avg. expression score in LCM sample: '164.514' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT2G45720 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '326.597' Avg. expression score in LCM sample: '164.514' Tissue used: 'full endosperm' |
|||||||
| AT2G45720 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G45720 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G45720 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G45720 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '152.481' Avg. embryo expression (LCM): '210.846' |
||||||
| AT2G45710 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '58.0102' Avg. embryo expression (LCM): '119.821' |
||||||
| AT2G45710 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G45710 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '47.0537' Avg. expression score in LCM sample: '13.478' Tissue used: 'full endosperm' |
|||||||
| AT2G45710 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G45710 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G45710 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '36.923' Avg. expression score in LCM sample: '13.478' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT2G45700 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 15 | 3 | 9 | 10 | 83.33% | 52.63% | 18 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.168497' Avg. expression score for this sample: '106.04' Avg. expression score in LCM sample: '95.4924' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G45700 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.56 x 10-4 | 46 | 1 | 97.87% | 47 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G45700 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G45700 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.67472 x 10-1 | 20 | 12 | 3 | 4 | 62.50% | 57.14% | 32 | 7 | TAIR8 |
Avg. embryo expression (dissected): '161.563' Avg. embryo expression (LCM): '117.159' |
||||
| AT2G45700 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.3523 x 10-2 | 20 | 1 | 95.24% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G45700 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.15765 x 10-1 | 20 | 6 | 7 | 31 | 76.92% | 81.58% | 26 | 38 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.168497' Avg. expression score for this sample: '145.111' Avg. expression score in LCM sample: '95.4924' Tissue used: 'full endosperm' |
|||||
| AT2G45695 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.30408 x 10-1 | 36 | 23 | 31 | 83 | 61.02% | 72.81% | 59 | 114 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.831314' Avg. expression score for this sample: '167.513' Avg. expression score in LCM sample: '30.1748' Tissue used: 'full endosperm' |
|||||
| AT2G45695 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.56359 x 10-1 | 11 | 3 | 78.57% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G45695 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.1 x 10-5 | 70 | 7 | 90.91% | 77 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G45695 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.5949 x 10-2 | 112 | 29 | 79.43% | 141 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G45695 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.22393 x 10-1 | 8 | 6 | 0 | 1 | 57.14% | 100.00% | 14 | 1 | TAIR8 |
Avg. embryo expression (dissected): '76.6123' Avg. embryo expression (LCM): '139.249' |
||||
| AT2G45695 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 13 | 5 | 5 | 4 | 72.22% | 44.44% | 18 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.831314' Avg. expression score for this sample: '93.8489' Avg. expression score in LCM sample: '30.1748' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G45690 | SSE1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.44444 x 10-1 | 3 | 0 | 0 | 2 | 100.00% | 100.00% | 3 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.152108' Avg. expression score for this sample: '21.1785' Avg. expression score in LCM sample: '17.3435' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G45690 | SSE1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 4 | 0 | 0 | 42.86% | 7 | 0 | TAIR8 |
Avg. embryo expression (dissected): '15.6744' Avg. embryo expression (LCM): '21.4124' |
||||
| AT2G45690 | SSE1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G45690 | SSE1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.20195 x 10-1 | 6 | 3 | 2 | 14 | 66.67% | 87.50% | 9 | 16 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.152108' Avg. expression score for this sample: '29.8544' Avg. expression score in LCM sample: '17.3435' Tissue used: 'full endosperm' |
||||
| AT2G45690 | SSE1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.08591 x 10-1 | 3 | 3 | 50.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G45690 | SSE1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.90337 x 10-1 | 6 | 4 | 60.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G45685 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G45685 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G45685 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.388909' Avg. embryo expression (LCM): '1.68285' |
|||||
| AT2G45685 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT2G45685 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 3 | 2 | 40.00% | 0 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.36178' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT2G45685 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.171744' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT2G45680 | TCP9 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.25302 x 10-1 | 44 | 25 | 19 | 21 | 63.77% | 52.50% | 69 | 40 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.605789' Avg. expression score for this sample: '52.1588' Avg. expression score in LCM sample: '8.02506' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G45680 | TCP9 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.92857 x 10-1 | 93 | 48 | 40 | 130 | 65.96% | 76.47% | 141 | 170 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.605789' Avg. expression score for this sample: '73.3055' Avg. expression score in LCM sample: '8.02506' Tissue used: 'full endosperm' |
||||
| AT2G45680 | TCP9 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 29 | 13 | 69.05% | 42 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G45680 | TCP9 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.25 x 10-4 | 77 | 11 | 87.50% | 88 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G45680 | TCP9 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.44 x 10-4 | 20 | 0 | 100.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G45680 | TCP9 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.85867 x 10-1 | 34 | 37 | 10 | 16 | 47.89% | 61.54% | 71 | 26 | TAIR8 |
Avg. embryo expression (dissected): '69.43' Avg. embryo expression (LCM): '20.5835' |
|||
| AT2G45670 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 8 | 11 | 1 | 2 | 42.11% | 66.67% | 19 | 3 | TAIR8 |
Avg. embryo expression (dissected): '47.6753' Avg. embryo expression (LCM): '39.8609' |
||||
| AT2G45670 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.5214 x 10-2 | 9 | 8 | 52.94% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G45670 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.9938 x 10-2 | 79 | 9 | 29 | 48 | 89.77% | 62.34% | 88 | 77 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.048758' Avg. expression score for this sample: '44.5605' Avg. expression score in LCM sample: '21.5324' Tissue used: 'full endosperm' |
|||||
| AT2G45670 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.92336 x 10-1 | 60 | 28 | 68.18% | 88 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G45670 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.6976 x 10-2 | 76 | 10 | 88.37% | 86 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G45670 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.07611 x 10-1 | 14 | 4 | 7 | 15 | 77.78% | 68.18% | 18 | 22 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.048758' Avg. expression score for this sample: '31.6994' Avg. expression score in LCM sample: '21.5324' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G45660 | AGL20 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.76829' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT2G45660 | AGL20 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G45660 | AGL20 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G45660 | AGL20 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
|||||
| AT2G45660 | AGL20 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G45660 | AGL20 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '9.43463' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT2G45650 | AGL6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.029 x 10-3 | 20 | 0 | 0 | 5 | 100.00% | 100.00% | 20 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001823' Avg. expression score for this sample: '76.8382' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||
| AT2G45650 | AGL6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G45650 | AGL6 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 15 | 0 | 100.00% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G45650 | AGL6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.76471 x 10-1 | 5 | 1 | 83.33% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT2G45650 | AGL6 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.686117' Avg. embryo expression (LCM): '0' |
|||||
| AT2G45650 | AGL6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 2 | 100.00% | 100.00% | 1 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001823' Avg. expression score for this sample: '6.64354' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT2G45640 | SAP18 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '509.228' Avg. expression score in LCM sample: '217.47' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT2G45640 | SAP18 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '464.597' Avg. embryo expression (LCM): '855.39' |
|||||
| AT2G45640 | SAP18 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G45640 | SAP18 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '582.521' Avg. expression score in LCM sample: '217.47' Tissue used: 'full endosperm' |
||||||
| AT2G45640 | SAP18 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G45640 | SAP18 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G45630 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.3815 x 10-2 | 34 | 9 | 79.07% | 43 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G45630 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.5861 x 10-2 | 9 | 0 | 100.00% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G45630 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.08285 x 10-1 | 17 | 12 | 3 | 2 | 58.62% | 40.00% | 29 | 5 | TAIR8 |
Avg. embryo expression (dissected): '24.5899' Avg. embryo expression (LCM): '4.63411' |
||||
| AT2G45630 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.12843 x 10-1 | 30 | 9 | 76.92% | 39 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT2G45630 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.49027 x 10-1 | 19 | 20 | 2 | 20 | 48.72% | 90.91% | 39 | 22 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.654877' Avg. expression score for this sample: '31.2423' Avg. expression score in LCM sample: '4.05662' Tissue used: 'full endosperm' |
|||||
| AT2G45630 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.29563 x 10-1 | 12 | 8 | 7 | 10 | 60.00% | 58.82% | 20 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.654877' Avg. expression score for this sample: '19.5296' Avg. expression score in LCM sample: '4.05662' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G45620 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.92298 x 10-1 | 440 | 181 | 193 | 402 | 70.85% | 67.56% | 621 | 595 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '4.8e-07' Avg. expression score for this sample: '358.059' Avg. expression score in LCM sample: '217.97' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT2G45620 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.9 x 10-8 | 646 | 169 | 256 | 645 | 79.26% | 71.59% | 815 | 901 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '4.8e-07' Avg. expression score for this sample: '482.964' Avg. expression score in LCM sample: '217.97' Tissue used: 'full endosperm' |