| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Solyc01g068060.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | MEG | 8.49 x 10-15 | 100.00% | 100.00% | SL2.40 | Imprinting Category (determined by % maternal): 'MEG complete' | ||||||||||
| Solyc01g067930.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | MEG | 1.07802 x 10-4 | 100.00% | 100.00% | SL2.40 | Imprinting Category (determined by % maternal): 'MEG complete' | ||||||||||
| Solyc01g067720.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | MEG | 9.69 x 10-8 | 94.12% | 100.00% | SL2.40 | Imprinting Category (determined by % maternal): 'MEG strong' | ||||||||||
| Solyc01g067680.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | MEG | 3.168345 x 10-3 | 100.00% | 85.00% | SL2.40 | Imprinting Category (determined by % maternal): 'MEG moderate' | ||||||||||
| Solyc01g067290.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | MEG | 2.55 x 10-9 | 100.00% | 97.65% | SL2.40 | Imprinting Category (determined by % maternal): 'MEG strong' | ||||||||||
| Solyc01g067070.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | MEG | 0.0 | 87.65% | 88.35% | SL2.40 | Imprinting Category (determined by % maternal): 'MEG moderate' | ||||||||||
| Solyc01g067040.1 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | MEG | 1.88 x 10-8 | 100.00% | 100.00% | SL2.40 | Imprinting Category (determined by % maternal): 'MEG complete' | ||||||||||
| Solyc01g067000.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | MEG | 4.48 x 10-17 | 83.62% | 93.82% | SL2.40 | Imprinting Category (determined by % maternal): 'MEG moderate' | ||||||||||
| Solyc01g066940.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | MEG | 9.8 x 10-8 | 100.00% | 100.00% | SL2.40 | Imprinting Category (determined by % maternal): 'MEG complete' | ||||||||||
| Solyc01g065490.2 | endosperm | Florez-Rueda et al. 2016 | S. chilense LA4329 (4329B) | S. chilense LA4329 (4329K) | 14 DAP (early globular) | N/A | N/A | PEG | 0.0 | 0.00% | 10.10% | SL2.40 | Imprinting Category (determined by % maternal): 'PEG strong' | ||||||||||
| Solyc01g065490.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | PEG | 0.0 | 32.14% | 1.50% | SL2.40 | Imprinting Category (determined by % maternal): 'PEG moderate' | ||||||||||
| Solyc01g057760.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | PEG | 0.0 | 14.76% | 11.84% | SL2.40 | Imprinting Category (determined by % maternal): 'PEG strong' | ||||||||||
| Solyc01g056940.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | MEG | 0.0 | 86.35% | 95.45% | SL2.40 | Imprinting Category (determined by % maternal): 'MEG moderate' | ||||||||||
| Solyc01g016410.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | PEG | 0.0 | 5.33% | 0.00% | SL2.40 | Imprinting Category (determined by % maternal): 'PEG strong' | ||||||||||
| Solyc01g015000.2 | endosperm | Florez-Rueda et al. 2016 | S. chilense LA4329 (4329B) | S. chilense LA4329 (4329K) | 14 DAP (early globular) | N/A | N/A | PEG | 0.0 | 14.23% | 10.07% | SL2.40 | Imprinting Category (determined by % maternal): 'PEG strong' | ||||||||||
| Solyc01g010310.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | MEG | 2.57 x 10-8 | 100.00% | 84.91% | SL2.40 | Imprinting Category (determined by % maternal): 'MEG moderate' | ||||||||||
| Solyc01g010000.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | PEG | 1.25 x 10-25 | 0.00% | 0.00% | SL2.40 | Imprinting Category (determined by % maternal): 'PEG complete' | ||||||||||
| Solyc01g009170.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | PEG | 0.0 | 13.98% | 18.66% | SL2.40 | Imprinting Category (determined by % maternal): 'PEG moderate' | ||||||||||
| Solyc01g008470.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | PEG | 1.61 x 10-22 | 21.62% | 17.65% | SL2.40 | Imprinting Category (determined by % maternal): 'PEG moderate' | ||||||||||
| Solyc01g007840.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | MEG | 0.0 | 91.88% | 86.03% | SL2.40 | Imprinting Category (determined by % maternal): 'MEG moderate' | ||||||||||
| Solyc01g007610.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | MEG | 2.379656 x 10-2 | 85.71% | 95.24% | SL2.40 | Imprinting Category (determined by % maternal): 'MEG moderate' | ||||||||||
| Solyc01g007570.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | MEG | 1.99 x 10-7 | 100.00% | 100.00% | SL2.40 | Imprinting Category (determined by % maternal): 'MEG complete' | ||||||||||
| Solyc01g007500.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | MEG | 1.59839 x 10-2 | 90.91% | 100.00% | SL2.40 | Imprinting Category (determined by % maternal): 'MEG moderate' | ||||||||||
| Solyc01g007350.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | MEG | 5.29 x 10-6 | 100.00% | 100.00% | SL2.40 | Imprinting Category (determined by % maternal): 'MEG complete' | ||||||||||
| Solyc01g007070.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | MEG | 7.09 x 10-14 | 100.00% | 92.63% | SL2.40 | Imprinting Category (determined by % maternal): 'MEG strong' | ||||||||||
| Solyc01g006990.2 | endosperm | Florez-Rueda et al. 2016 | S. chilense LA4329 (4329B) | S. chilense LA4329 (4329K) | 14 DAP (early globular) | N/A | N/A | PEG | 0.0 | 8.33% | 29.30% | SL2.40 | Imprinting Category (determined by % maternal): 'PEG moderate' | ||||||||||
| Solyc01g006900.2 | endosperm | Florez-Rueda et al. 2016 | S. chilense LA4329 (4329B) | S. chilense LA4329 (4329K) | 14 DAP (early globular) | N/A | N/A | PEG | 0.0 | 0.00% | 32.75% | SL2.40 | Imprinting Category (determined by % maternal): 'PEG moderate' | ||||||||||
| Solyc01g006880.2 | endosperm | Florez-Rueda et al. 2016 | S. chilense LA4329 (4329B) | S. chilense LA4329 (4329K) | 14 DAP (early globular) | N/A | N/A | PEG | 0.0 | 0.00% | 4.08% | SL2.40 | Imprinting Category (determined by % maternal): 'PEG strong' | ||||||||||
| Solyc01g006800.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | MEG | 4.91 x 10-21 | 85.19% | 88.27% | SL2.40 | Imprinting Category (determined by % maternal): 'MEG moderate' | ||||||||||
| Solyc01g006680.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | MEG | 8.09 x 10-5 | 95.65% | 83.33% | SL2.40 | Imprinting Category (determined by % maternal): 'MEG moderate' | ||||||||||
| Solyc01g006400.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | MEG | 2.37 x 10-10 | 100.00% | 97.78% | SL2.40 | Imprinting Category (determined by % maternal): 'MEG strong' | ||||||||||
| Solyc00g059100.2 | endosperm | Florez-Rueda et al. 2016 | S. peruvianum LA1616 (1616A) | S. peruvianum LA1616 (1616J) | 14 DAP (early globular) | N/A | N/A | MEG | 0.0 | 94.90% | 91.37% | SL2.40 | Imprinting Category (determined by % maternal): 'MEG moderate' |